RchiOBHm_Chr3g0473221

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
19151904 .. 19154193
2290 bp
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UTR
Exon/CDS
Intron
PRQ43890

Sequence Viewer

Length: 252 bp
ATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGTGATTCAACACCTGAAGATGGTGATCAGGTCATATATCATTGCATTGTTAGAACATTGGATGGAGTTATTGTTGAATCTTCAAGATCAGAATTTAGTGCCTTCTATTACGGCGAGAGTGCTGTTCGTTTAGTAATGGGGAAGCTGGTTTGGTTGAGTTGGGGAATTGGAGCTATAAAGCAACAGAATGAGGTACCTTGA

Protein Analysis

83

Amino Acids

9.02

Weight (kDa)

5.68

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 50, 71
AgsI TTSAA 3 cut(s) 60, 128, 135
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 21, 196, 224
AluI AGCT 3 cut(s) 21, 196, 224
AoxI GGCC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 65, 86
BanI GGYRCC 1 cut(s) 244
BccI CCATC 2 cut(s) 65, 107
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 2 cut(s) 36, 76
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 71
Bse3DI GCAATG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 50, 71
BseMI GCAATG 1 cut(s) 91
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 50, 71
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 36, 76, 137
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 91
BssMI GATC 3 cut(s) 36, 76, 137
Bst2UI CCWGG 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 3 cut(s) 39, 79, 140
BstMBI GATC 3 cut(s) 36, 76, 137
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 1 cut(s) 245
CviJI RGCY 4 cut(s) 14, 21, 196, 224
CviKI_1 RGCY 4 cut(s) 14, 21, 196, 224
CviQI GTAC 1 cut(s) 245
DpnI GATC 3 cut(s) 38, 78, 139
DpnII GATC 3 cut(s) 36, 76, 137
EaeI YGGCCR 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 43
FaiI YATR 3 cut(s) 86, 88, 227
FbaI TGATCA 2 cut(s) 36, 76
FokI GGATG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 2 cut(s) 56, 128
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 65, 86
Hpy188I TCNGA 2 cut(s) 41, 142
Hpy188III TCNNGA 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 96
KpnI GGTACC 1 cut(s) 248
Ksp22I TGATCA 2 cut(s) 36, 76
Kzo9I GATC 3 cut(s) 36, 76, 137
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 6 cut(s) 28, 30, 57, 65, 78, 182
MabI ACCWGGT 1 cut(s) 43
MalI GATC 3 cut(s) 38, 78, 139
MboI GATC 3 cut(s) 36, 76, 137
MboII GAAGA 2 cut(s) 80, 123
MluCI AATT 2 cut(s) 143, 216
MnlI CCTC 2 cut(s) 44, 235
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
NdeII GATC 3 cut(s) 36, 76, 137
NlaIV GGNNCC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 56, 128
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 246
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
Sau3AI GATC 3 cut(s) 36, 76, 137
ScrFI CCNGG 1 cut(s) 45
SetI ASST 9 cut(s) 23, 46, 55, 67, 84, 198, 226, 246, 250
SexAI ACCWGGT 1 cut(s) 43
SgeI CNNG 9 cut(s) 27, 34, 56, 57, 77, 92, 147, 178, 209
Sse9I AATT 2 cut(s) 143, 216
StyD4I CCNGG 1 cut(s) 43
TasI AATT 2 cut(s) 143, 216
TfiI GAWTC 2 cut(s) 56, 128
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 17, 41
TspRI CASTG 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.