Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19100655 .. 19109285

Gene Structure 8631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATACCGTCTCCTCTAACAATCAGATTTGGAAGGAGCGACAAGAGAGGGCAGAATGATGAAGGCGAGACAAGAGTAGGGGACTGGATGAGAGGCGAGACAGGCAGAAGAGGAGGAGACAAGGGAAGCGGTGGTGGAGATGGAAAGTCAAAGGGGAAGACAAGGGAAAGAGATGCTGCGTTAAATGCCATTCAATCACCTTTATTTGATATTGGTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTATATGAGGTAAATGCAGCAGCTGAGGTTATTTATGATCTTATTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGTTCAAGTTAGCATCACTCTAATTACTTCTGGATTCAAACACCAAGAAGAAAATGATGGGAGGCCAATCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

168

Amino Acids

17.98

Weight (kDa)

5.25

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	46 - 135	3.5e-23	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	311, 347
AcsI	RAATTY	1 cut(s)	328
AdeI	CACNNNGTG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	194, 371, 403
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	5 cut(s)	15, 62, 92, 111, 441
AlwI	GGATC	2 cut(s)	311, 347
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	3 cut(s)	176, 287, 290
ApoI	RAATTY	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	189
BbsI	GAAGAC	2 cut(s)	164, 478
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	163, 299, 302
BccI	CCATC	3 cut(s)	134, 364, 416
BciT130I	CCWGG	1 cut(s)	437
BcoDI	GTCTC	5 cut(s)	15, 62, 92, 111, 441
BisI	GCNGC	3 cut(s)	177, 288, 291
BlsI	GCNGC	3 cut(s)	178, 289, 292
Bme1390I	CCNGG	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	2 cut(s)	163, 387
BpiI	GAAGAC	2 cut(s)	164, 478
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	457
Bse1I	ACTGG	3 cut(s)	89, 235, 256
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	93
BseMII	CTCAG	3 cut(s)	285, 376, 501
BseNI	ACTGG	3 cut(s)	89, 235, 256
BseRI	GAGGAG	2 cut(s)	126, 129
BseXI	GCAGC	3 cut(s)	163, 299, 302
BshFI	GGCC	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	5 cut(s)	15, 62, 92, 111, 441
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	307, 316, 352
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	3 cut(s)	286, 375, 500
BspPI	GGATC	2 cut(s)	311, 347
BsrI	ACTGG	3 cut(s)	89, 235, 256
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	3 cut(s)	307, 316, 352
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	294, 362, 487
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	3 cut(s)	310, 319, 355
BstMAI	GTCTC	5 cut(s)	15, 62, 92, 111, 441
BstMBI	GATC	3 cut(s)	307, 316, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 185
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	163, 299, 302
BstV2I	GAAGAC	2 cut(s)	164, 478
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 370
CaiI	CAGNNNCTG	1 cut(s)	293
CviJI	RGCY	3 cut(s)	227, 293, 430
CviKI_1	RGCY	3 cut(s)	227, 293, 430
DdeI	CTNAG	3 cut(s)	294, 362, 487
DpnI	GATC	3 cut(s)	309, 318, 354
DpnII	GATC	3 cut(s)	307, 316, 352
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	15
FaiI	YATR	5 cut(s)	218, 248, 274, 276, 306
FaqI	GGGAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	177, 288, 291
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	177, 288, 291
GluI	GCNGC	3 cut(s)	177, 288, 291
HaeIII	GGCC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	399, 462
HphI	GGTGA	1 cut(s)	189
Hpy188I	TCNGA	2 cut(s)	26, 490
Hpy188III	TCNNGA	2 cut(s)	241, 396
HpyAV	CCTTC	4 cut(s)	27, 56, 485, 493
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 185
HpyF3I	CTNAG	3 cut(s)	294, 362, 487
HpySE526I	ACGT	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	307, 316, 352
LmnI	GCTCC	2 cut(s)	36, 341
LpnPI	CCDG	8 cut(s)	70, 87, 216, 226, 237, 381, 422, 449
Lsp1109I	GCAGC	3 cut(s)	163, 299, 302
LweI	GCATC	2 cut(s)	163, 387
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	309, 318, 354
MboI	GATC	3 cut(s)	307, 316, 352
MboII	GAAGA	4 cut(s)	120, 169, 425, 483
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	3 cut(s)	234, 328, 387
MmeI	TCCRAC	1 cut(s)	344
MroXI	GAANNNNTTC	1 cut(s)	475
MseI	TTAA	2 cut(s)	182, 332
MspA1I	CMGCKG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	102, 185
NdeII	GATC	3 cut(s)	307, 316, 352
NmuCI	GTSAC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	399, 462
PkrI	GCNGC	3 cut(s)	178, 289, 292
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	182, 332
SatI	GCNGC	3 cut(s)	177, 288, 291
Sau3AI	GATC	3 cut(s)	307, 316, 352
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	5 cut(s)	202, 282, 295, 300, 478
SfaNI	GCATC	2 cut(s)	163, 387
Sse9I	AATT	3 cut(s)	234, 328, 387
SsiI	CCGC	1 cut(s)	129
SspI	AATATT	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	469
TasI	AATT	3 cut(s)	234, 328, 387
TfiI	GAWTC	2 cut(s)	399, 462
Tru1I	TTAA	2 cut(s)	182, 332
Tru9I	TTAA	2 cut(s)	182, 332
TscAI	CASTG	2 cut(s)	351, 370
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	3 cut(s)	176, 287, 290
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	351, 370
XapI	RAATTY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.