Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19154422 .. 19156104

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTCTGGAACATAACTGGTGGAACTGATTTGACACTATATGAGGTAAATGCAGCAGCTGAGGTTATTTATGATCTTATTGACCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGTTCAAGTTAGCATCACTCTAATTACTTCTGGATTCAAACACCAAGAAGAAAGTGATGGGAGGCCAATCCAGGCACAAGGATACATTACCCTTGGAATCAATCGAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACACTCACGTTATCCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

5.58

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	3 - 57	4.5e-13	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	137, 169, 289
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	53, 56
ApoI	RAATTY	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	65, 68
BccI	CCATC	2 cut(s)	130, 182
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	223, 314
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	223, 314
BseMII	CTCAG	3 cut(s)	51, 142, 267
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	65, 68
BshFI	GGCC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	73, 118
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	52, 141, 266
BspPI	GGATC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	223, 314
BssMI	GATC	2 cut(s)	73, 118
BssT1I	CCWWGG	2 cut(s)	223, 314
Bst2UI	CCWGG	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	60, 128, 253
BstKTI	GATC	2 cut(s)	76, 121
BstMBI	GATC	2 cut(s)	73, 118
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	65, 68
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 136
CaiI	CAGNNNCTG	1 cut(s)	59
CviJI	RGCY	2 cut(s)	59, 196
CviKI_1	RGCY	2 cut(s)	59, 196
DdeI	CTNAG	3 cut(s)	60, 128, 253
DpnI	GATC	2 cut(s)	75, 120
DpnII	GATC	2 cut(s)	73, 118
DraIII	CACNNNGTG	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	223, 314
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	223, 314
ErhI	CCWWGG	2 cut(s)	223, 314
FaiI	YATR	4 cut(s)	14, 40, 42, 72
Fnu4HI	GCNGC	2 cut(s)	54, 57
Fsp4HI	GCNGC	2 cut(s)	54, 57
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	165, 228, 274
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	4 cut(s)	7, 162, 278, 286
HpyAV	CCTTC	2 cut(s)	251, 259
HpyCH4IV	ACGT	2 cut(s)	241, 307
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	60, 128, 253
HpySE526I	ACGT	2 cut(s)	241, 307
Kzo9I	GATC	2 cut(s)	73, 118
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	3, 147, 188, 215, 291
Lsp1109I	GCAGC	2 cut(s)	65, 68
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	2 cut(s)	241, 307
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	75, 120
MboI	GATC	2 cut(s)	73, 118
MboII	GAAGA	4 cut(s)	191, 249, 301, 304
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	94, 153
MnlI	CCTC	4 cut(s)	37, 55, 186, 256
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	73, 118
NmuCI	GTSAC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	165, 228, 274
PkrI	GCNGC	2 cut(s)	55, 58
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	2 cut(s)	73, 118
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	48, 61, 66, 244, 310
SfaNI	GCATC	1 cut(s)	153
Sse9I	AATT	2 cut(s)	94, 153
SspI	AATATT	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	223, 314
TaiI	ACGT	2 cut(s)	244, 310
TaqI	TCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	94, 153
TfiI	GAWTC	3 cut(s)	165, 228, 274
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	2 cut(s)	117, 136
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	53, 56
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	2 cut(s)	117, 136
XapI	RAATTY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.