RchiOBHm_Chr3g0473301

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
19185271 .. 19186095
825 bp
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UTR
Exon/CDS
Intron
PRQ43898

Sequence Viewer

Length: 321 bp
ATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGTGATTCAACACCTGAAGATGGTCATCAGGTCATATATCATTGCACTGTTAGAACATTGGATGGAGTTATTGTTGAATCTTCAAGATCAGAATTTAGTGCCTTCTATTACGGCAAGAGTGCTGTTCGTTTAGTAATGGGGAAGCTGGTTTGGTTGAGTTGGGGAATTGGAGCTATAAAGCAACAGAATGAGTCAGCTTGGGATGAACTCAAGCATACTAGGCAAGCCATTGGATCCCTGGTAACATCAGAAACCCAAAACGACAGTTGA

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

6.82

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 279, 292
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 50, 71
AgsI TTSAA 3 cut(s) 60, 128, 135
AjnI CCWGG 2 cut(s) 43, 288
AluBI AGCT 4 cut(s) 21, 196, 224, 248
AluI AGCT 4 cut(s) 21, 196, 224, 248
AlwI GGATC 2 cut(s) 279, 292
AoxI GGCC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 284
BccI CCATC 2 cut(s) 65, 107
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 45, 290
BclI TGATCA 1 cut(s) 36
BfaI CTAG 1 cut(s) 270
Bme1390I CCNGG 2 cut(s) 45, 290
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 45, 290
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 71
Bse3DI GCAATG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 45, 290
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 118, 259
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 50, 71
BseMI GCAATG 1 cut(s) 91
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 50, 71
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 36, 137, 284
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 2 cut(s) 279, 292
BsrDI GCAATG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 3 cut(s) 36, 137, 284
Bst2UI CCWGG 2 cut(s) 45, 290
Bst4CI ACNGT 2 cut(s) 100, 317
BstC8I GCNNGC 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 118, 259
BstKTI GATC 3 cut(s) 39, 140, 287
BstMBI GATC 3 cut(s) 36, 137, 284
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 2 cut(s) 45, 290
BstSCI CCNGG 2 cut(s) 43, 288
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 118, 259
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 96
Cac8I GCNNGC 1 cut(s) 276
CsiI ACCWGGT 1 cut(s) 43
CviJI RGCY 6 cut(s) 14, 21, 196, 224, 248, 278
CviKI_1 RGCY 6 cut(s) 14, 21, 196, 224, 248, 278
DpnI GATC 3 cut(s) 38, 139, 286
DpnII GATC 3 cut(s) 36, 137, 284
EaeI YGGCCR 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 43, 288
FaiI YATR 4 cut(s) 86, 88, 227, 267
FbaI TGATCA 1 cut(s) 36
FokI GGATG 2 cut(s) 125, 266
FspBI CTAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 3 cut(s) 56, 128, 242
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 3 cut(s) 41, 142, 301
Hpy188III TCNNGA 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 100, 317
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 3 cut(s) 36, 137, 284
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 8 cut(s) 28, 30, 57, 65, 78, 182, 275, 302
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 38, 139, 286
MboI GATC 3 cut(s) 36, 137, 284
MboII GAAGA 2 cut(s) 80, 123
MflI RGATCY 1 cut(s) 284
MluCI AATT 2 cut(s) 143, 216
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 1 cut(s) 44
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 45, 290
MvaI CCWGG 2 cut(s) 45, 290
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 3 cut(s) 36, 137, 284
NlaIV GGNNCC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 56, 128
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 43, 288
PspGI CCWGG 2 cut(s) 43, 288
PspN4I GGNNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 284
Sau3AI GATC 3 cut(s) 36, 137, 284
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 45, 290
SetI ASST 8 cut(s) 23, 46, 55, 67, 84, 198, 226, 250
SexAI ACCWGGT 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 2 cut(s) 143, 216
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 43, 288
TaaI ACNGT 2 cut(s) 100, 317
TasI AATT 2 cut(s) 143, 216
TfiI GAWTC 2 cut(s) 56, 128
TscAI CASTG 2 cut(s) 39, 103
TspDTI ATGAA 3 cut(s) 17, 41, 270
TspRI CASTG 2 cut(s) 39, 103
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.