Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30924134 .. 30926515

Gene Structure 2382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGCCACGACCTGTGCCCAGGTAAGATCTACGTGATTGCTGCTAAGAAGTCTTCAGGGAAGGTGGTGACTACGAAAAGAATGAAATTCAGCGGCTTCAACGCATTCTCGAACAGGTTTGATCCTTCCATTGGATACTATGCATTTGTTATGACTTATGATCAAAGTCATGATTGTTACCACATCTTCAATGGAATAACTGTTTTTTTTTCCCCTTCCTCTCTGGGAATAGGGAAGACAAGGGAAAGAGATGCTGCGTTAAATGCCATTCAATCACCTTTATTTGATATTGGTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGAAACTATATGAGGTAAATGCAGCAGCTGAGGTTATATATGATCTTGTTGATCCAACAGAAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGTTCAAGTAAAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGTCCTCCCTCCTTCTCAGAAGGTAGTTCAGTCGAGATTCCCGATTTCTTGAAGAAAGGACGCTCACGTTATCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

199

Amino Acids

21.71

Weight (kDa)

6.83

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	78 - 151	1.8e-17	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	3 cut(s)	116, 389, 425
AcsI	RAATTY	2 cut(s)	86, 406
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	6 cut(s)	100, 190, 272, 346, 449, 565
AjnI	CCWGG	2 cut(s)	19, 477
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	3 cut(s)	116, 389, 425
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	41, 254, 365, 368
ApoI	RAATTY	2 cut(s)	86, 406
AsuHPI	GGTGA	2 cut(s)	79, 267
BaeGI	GKGCMC	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	45, 242
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	28, 241, 377, 380
BccI	CCATC	2 cut(s)	442, 458
BciT130I	CCWGG	2 cut(s)	21, 479
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	5 cut(s)	42, 94, 255, 366, 369
BlsI	GCNGC	5 cut(s)	43, 95, 256, 367, 370
Bme1390I	CCNGG	2 cut(s)	21, 479
BmrFI	CCNGG	2 cut(s)	21, 479
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	45, 242
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	19, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	313, 334
BseBI	CCWGG	2 cut(s)	21, 479
BseDI	CCNNGG	2 cut(s)	19, 499
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	363, 454, 543
BseNI	ACTGG	2 cut(s)	313, 334
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	28, 241, 377, 380
BshFI	GGCC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	364, 453, 542
BspHI	TCATGA	1 cut(s)	169
BspPI	GGATC	3 cut(s)	116, 389, 425
BsrI	ACTGG	2 cut(s)	313, 334
BssECI	CCNNGG	2 cut(s)	19, 499
BssMI	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	21, 479
Bst4CI	ACNGT	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	45, 372, 440, 529
BstKTI	GATC	6 cut(s)	30, 124, 163, 388, 397, 433
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	21, 479
BstSCI	CCNGG	2 cut(s)	19, 477
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	4 cut(s)	28, 241, 377, 380
BstV2I	GAAGAC	2 cut(s)	45, 242
BstX2I	RGATCY	2 cut(s)	27, 430
BstYI	RGATCY	2 cut(s)	27, 430
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 448
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	169
CseI	GACGC	1 cut(s)	582
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	6, 96, 305, 371, 472
CviKI_1	RGCY	5 cut(s)	6, 96, 305, 371, 472
DdeI	CTNAG	4 cut(s)	45, 372, 440, 529
DpnI	GATC	6 cut(s)	29, 123, 162, 387, 396, 432
DpnII	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
DraIII	CACNNNGTG	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	19, 477
EcoT14I	CCWWGG	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	1 cut(s)	173
FatI	CATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	42, 94, 255, 366, 369
Fsp4HI	GCNGC	5 cut(s)	42, 94, 255, 366, 369
GluI	GCNGC	5 cut(s)	42, 94, 255, 366, 369
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	472
HgaI	GACGC	1 cut(s)	582
Hin1II	CATG	1 cut(s)	173
HinfI	GANTC	2 cut(s)	504, 550
HphI	GGTGA	2 cut(s)	79, 267
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	6 cut(s)	109, 170, 319, 547, 554, 562
HpyAV	CCTTC	5 cut(s)	55, 135, 225, 527, 535
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	33, 580
HpyCH4V	TGCA	2 cut(s)	143, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	4 cut(s)	45, 372, 440, 529
HpySE526I	ACGT	2 cut(s)	33, 580
Hsp92II	CATG	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	4 cut(s)	28, 241, 377, 380
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	2 cut(s)	33, 580
MaeIII	GTNAC	3 cut(s)	67, 176, 424
MalI	GATC	6 cut(s)	29, 123, 162, 387, 396, 432
MboI	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
MboII	GAAGA	4 cut(s)	45, 178, 247, 577
MflI	RGATCY	2 cut(s)	27, 430
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	3 cut(s)	86, 312, 406
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	7 cut(s)	229, 294, 349, 367, 462, 528, 532
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	2 cut(s)	260, 410
MspA1I	CMGCKG	2 cut(s)	93, 371
MspR9I	CCNGG	2 cut(s)	21, 479
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	2 cut(s)	21, 479
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
NlaIII	CATG	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	67, 424
NsiI	ATGCAT	1 cut(s)	145
PagI	TCATGA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	504, 550
PkrI	GCNGC	5 cut(s)	43, 95, 256, 367, 370
Ppu21I	YACGTR	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	19, 477
PspGI	CCWGG	2 cut(s)	19, 477
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	27, 430
PvuII	CAGCTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	260, 410
SatI	GCNGC	5 cut(s)	42, 94, 255, 366, 369
Sau3AI	GATC	6 cut(s)	27, 121, 160, 385, 394, 430
ScrFI	CCNGG	2 cut(s)	21, 479
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	3 cut(s)	86, 312, 406
SsiI	CCGC	1 cut(s)	93
SspI	AATATT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	19, 477
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	36, 583
TaqI	TCGA	3 cut(s)	110, 511, 546
TasI	AATT	3 cut(s)	86, 312, 406
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	504, 550
Tru1I	TTAA	2 cut(s)	260, 410
Tru9I	TTAA	2 cut(s)	260, 410
TscAI	CASTG	2 cut(s)	429, 448
TseFI	GTSAC	2 cut(s)	67, 424
TseI	GCWGC	4 cut(s)	41, 254, 365, 368
Tsp45I	GTSAC	2 cut(s)	67, 424
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	429, 448
XapI	RAATTY	2 cut(s)	86, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.