Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00301

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

96892 .. 99060

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAATGCGGGTTCTTCATTGATGGGGATAGGAACTGCAACTGGGAAGACAAGGGCAAGAGATGCTGCTTTAAATGCCATTCAATCATCTTTATTAGATATTGTTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACACTATGAGGTAAATGCTGCAGCAGAGGTTATATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGATATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTGTCAGAAGGTAGTTCAGTCGAGATTCCCGATTTCTTGAAGAAGAAAAGGATGCTCACGTTATCCAGTTTGAAATGCTTCCTTTTTATTCCAATGAGTGCCTTGTCTGAGGCCTCCCAGCCTCTTCATTACCACATCAGCATCAATCTGAGGGATTTAAGTATGCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

182

Amino Acids

19.49

Weight (kDa)

5.57

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	5 - 99	7.8e-28	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	203, 239
AcsI	RAATTY	1 cut(s)	220
AdeI	CACNNNGTG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	86, 295, 415, 448
AjnI	CCWGG	1 cut(s)	327
AlwI	GGATC	2 cut(s)	203, 239
AoxI	GGCC	2 cut(s)	320, 486
ApeKI	GCWGC	3 cut(s)	68, 179, 182
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	2 cut(s)	367, 452
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	56, 370
BbvI	GCAGC	3 cut(s)	55, 166, 194
BccI	CCATC	3 cut(s)	19, 256, 308
BciT130I	CCWGG	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	180, 545
BisI	GCNGC	3 cut(s)	69, 180, 183
BlsI	GCNGC	3 cut(s)	70, 181, 184
Bme1390I	CCNGG	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	55, 279, 417, 525
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	56, 370
BpmI	CTGGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	349
Bse1I	ACTGG	5 cut(s)	49, 127, 148, 292, 441
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	268, 474, 515
BseNI	ACTGG	5 cut(s)	49, 127, 148, 292, 441
BseXI	GCAGC	3 cut(s)	55, 166, 194
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	2 cut(s)	322, 488
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	322, 488
Bsp143I	GATC	3 cut(s)	199, 208, 244
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	322, 488
BspCNI	CTCAG	3 cut(s)	267, 475, 516
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	203, 239
BsrI	ACTGG	5 cut(s)	49, 127, 148, 292, 441
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	3 cut(s)	199, 208, 244
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	504
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	254, 483, 524
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	202, 211, 247
BstMBI	GATC	3 cut(s)	199, 208, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 77
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	2 cut(s)	180, 545
BstV1I	GCAGC	3 cut(s)	55, 166, 194
BstV2I	GAAGAC	2 cut(s)	56, 370
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	322, 488
BtsCI	GGATG	1 cut(s)	432
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 262
CviJI	RGCY	4 cut(s)	119, 322, 488, 496
CviKI_1	RGCY	4 cut(s)	119, 322, 488, 496
DdeI	CTNAG	3 cut(s)	254, 483, 524
DpnI	GATC	3 cut(s)	201, 210, 246
DpnII	GATC	3 cut(s)	199, 208, 244
DraI	TTTAAA	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaiI	YATR	7 cut(s)	110, 140, 168, 194, 196, 198, 539
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	3 cut(s)	69, 180, 183
FokI	GGATG	1 cut(s)	439
Fsp4HI	GCNGC	3 cut(s)	69, 180, 183
GluI	GCNGC	3 cut(s)	69, 180, 183
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	322, 488
HinfI	GANTC	3 cut(s)	291, 354, 400
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	382, 484, 525
Hpy188III	TCNNGA	4 cut(s)	133, 397, 404, 412
HpyAV	CCTTC	2 cut(s)	377, 378
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	41, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 77
HpyF3I	CTNAG	3 cut(s)	254, 483, 524
HpySE526I	ACGT	1 cut(s)	434
Kzo9I	GATC	3 cut(s)	199, 208, 244
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	9 cut(s)	30, 108, 118, 129, 273, 314, 341, 454, 506
Lsp1109I	GCAGC	3 cut(s)	55, 166, 194
LweI	GCATC	4 cut(s)	55, 279, 417, 525
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	201, 210, 246
MboI	GATC	3 cut(s)	199, 208, 244
MboII	GAAGA	7 cut(s)	9, 61, 317, 375, 427, 430, 491
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	3 cut(s)	126, 220, 279
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	9 cut(s)	108, 163, 181, 312, 382, 478, 499, 507, 519
MroXI	GAANNNNTTC	2 cut(s)	367, 452
MseI	TTAA	3 cut(s)	74, 224, 533
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	65, 77
NdeII	GATC	3 cut(s)	199, 208, 244
NmuCI	GTSAC	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	2 cut(s)	367, 452
PfeI	GAWTC	3 cut(s)	291, 354, 400
PkrI	GCNGC	3 cut(s)	70, 181, 184
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	74, 224, 533
SatI	GCNGC	3 cut(s)	69, 180, 183
Sau3AI	GATC	3 cut(s)	199, 208, 244
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	5 cut(s)	174, 192, 370, 388, 437
SfaNI	GCATC	4 cut(s)	55, 279, 417, 525
SfcI	CTRYAG	2 cut(s)	180, 545
Sse9I	AATT	3 cut(s)	126, 220, 279
SseBI	AGGCCT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	349
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	361, 396
TasI	AATT	3 cut(s)	126, 220, 279
TfiI	GAWTC	3 cut(s)	291, 354, 400
Tru1I	TTAA	3 cut(s)	74, 224, 533
Tru9I	TTAA	3 cut(s)	74, 224, 533
TscAI	CASTG	2 cut(s)	243, 262
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	68, 179, 182
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	9, 491
TspRI	CASTG	2 cut(s)	243, 262
XapI	RAATTY	1 cut(s)	220
XmnI	GAANNNNTTC	2 cut(s)	367, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.