Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016164.1

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

58104 .. 64677

Gene Structure 6574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016164.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

gccattgagaggagaagagctcgcttgggtgaggagaatggcgaaactgcagagggtcaatttccatctctacaagttctggatgctccccctgagcatcaagttctcgctgctactccttcaaccaataagaagagaccttacccacctccttctgttcttaaagtgcacaaaattctgctagaggtggctaatcagcctgatgagggagagttcgttacaccacagaagaagctgctgaactcaattgacaaagttgagaaggtagtgttggaagaacttcagaggcagaagaggacgccgagtgctaagaaggcagagagggaaagaaagattcctgggctggtaaatgtcgactttgctgatgtaagggctataatggcgaatgcaggttcttcattgatggggataggaactgcaactgggaagacaagggcaagagatgctgcattaaatgccattcaatcacctctattagatatcggtatagagagggctactggaattgtctggaacataactggtggaactgatttgacactctatgaggtaaatgctgcagcagaggttatatatgaccttgttgatccaacagcaaatttaatatttggagcagtgacagatccatcactcagtggtcaagtcagcatcactctaattgctactggattcaaacgccaagaagaaagtgatgggaggccactccaggcacaaggagacattacccttggaatcaatcgaagaccttcctccttctcagaaggtagttcagttgagattccggatttcttgaagaagaaaggacgctcacgttatccaagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

275

Amino Acids

29.87

Weight (kDa)

8.73

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	781
AclWI	GGATC	2 cut(s)	581, 617
AcsI	RAATTY	2 cut(s)	174, 598
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	9, 206
AgsI	TTSAA	4 cut(s)	123, 464, 673, 793
AjnI	CCWGG	2 cut(s)	337, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	20, 235
AluI	AGCT	2 cut(s)	20, 235
Alw21I	GWGCWC	2 cut(s)	22, 171
Alw26I	GTCTC	2 cut(s)	130, 711
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	581, 617
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	1 cut(s)	698
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	5 cut(s)	110, 235, 446, 557, 560
ApoI	RAATTY	2 cut(s)	174, 598
Asp700I	GAANNNNTTC	2 cut(s)	279, 745
AsuHPI	GGTGA	2 cut(s)	41, 459
BaeGI	GKGCMC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BbsI	GAAGAC	2 cut(s)	434, 748
Bbv12I	GWGCWC	2 cut(s)	22, 171
BbvI	GCAGC	5 cut(s)	97, 222, 433, 544, 572
BccI	CCATC	4 cut(s)	73, 397, 634, 686
BciT130I	CCWGG	2 cut(s)	339, 707
BcoDI	GTCTC	2 cut(s)	130, 711
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	2 cut(s)	48, 558
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	5 cut(s)	111, 236, 447, 558, 561
BlsI	GCNGC	5 cut(s)	112, 237, 448, 559, 562
Bme1390I	CCNGG	2 cut(s)	339, 707
BmrFI	CCNGG	2 cut(s)	339, 707
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	4 cut(s)	73, 106, 433, 657
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	2 cut(s)	434, 748
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	689
Bpu10I	CCTNAGC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	338, 727
BsaWI	WCCGGW	1 cut(s)	781
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	9, 206
Bse1I	ACTGG	4 cut(s)	427, 505, 526, 670
BseAI	TCCGGA	1 cut(s)	781
BseBI	CCWGG	2 cut(s)	339, 707
BseDI	CCNNGG	2 cut(s)	338, 727
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	9, 206
BseMII	CTCAG	3 cut(s)	84, 646, 771
BseNI	ACTGG	4 cut(s)	427, 505, 526, 670
BseRI	GAGGAG	2 cut(s)	25, 47
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	5 cut(s)	97, 222, 433, 544, 572
BshFI	GGCC	1 cut(s)	700
BsiHKAI	GWGCWC	2 cut(s)	22, 171
BsiSI	CCGG	1 cut(s)	782
BslI	CCNNNNNNNGG	2 cut(s)	9, 206
BsmAI	GTCTC	2 cut(s)	130, 711
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	22, 171
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	2 cut(s)	586, 622
BspANI	GGCC	1 cut(s)	700
BspCNI	CTCAG	3 cut(s)	85, 645, 770
BspEI	TCCGGA	1 cut(s)	781
BspMAI	CTGCAG	2 cut(s)	52, 562
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	581, 617
BspQI	GCTCTTC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	130
BsrI	ACTGG	4 cut(s)	427, 505, 526, 670
BssECI	CCNNGG	2 cut(s)	338, 727
BssMI	GATC	2 cut(s)	586, 622
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	2 cut(s)	339, 707
Bst6I	CTCTTC	3 cut(s)	10, 128, 287
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	2 cut(s)	443, 455
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	4 cut(s)	93, 309, 632, 757
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	589, 625
BstMAI	GTCTC	2 cut(s)	130, 711
BstMBI	GATC	2 cut(s)	586, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 380, 443, 455
BstNI	CCWGG	2 cut(s)	339, 707
BstSCI	CCNGG	2 cut(s)	337, 705
BstSFI	CTRYAG	2 cut(s)	48, 558
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	5 cut(s)	97, 222, 433, 544, 572
BstV2I	GAAGAC	2 cut(s)	434, 748
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	700
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	621, 640
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	22
CseI	GACGC	2 cut(s)	307, 813
CviJI	RGCY	8 cut(s)	20, 191, 199, 235, 343, 374, 497, 700
CviKI_1	RGCY	8 cut(s)	20, 191, 199, 235, 343, 374, 497, 700
DdeI	CTNAG	4 cut(s)	93, 309, 632, 757
DpnI	GATC	2 cut(s)	588, 624
DpnII	GATC	2 cut(s)	586, 622
DraIII	CACNNNGTG	1 cut(s)	635
Eam1104I	CTCTTC	3 cut(s)	10, 128, 287
EarI	CTCTTC	3 cut(s)	10, 128, 287
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	727
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	337, 705
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	727
FaiI	YATR	7 cut(s)	377, 488, 518, 546, 572, 574, 576
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	111, 236, 447, 558, 561
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	5 cut(s)	111, 236, 447, 558, 561
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	5 cut(s)	111, 236, 447, 558, 561
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	1 cut(s)	700
HapII	CCGG	1 cut(s)	782
HgaI	GACGC	2 cut(s)	307, 813
Hin1I	GRCGYC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	334, 669, 732, 778
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	2 cut(s)	41, 459
Hpy166II	GTNNAC	2 cut(s)	169, 355
Hpy188I	TCNGA	2 cut(s)	285, 760
Hpy188III	TCNNGA	4 cut(s)	80, 511, 782, 790
Hpy8I	GTNNAC	2 cut(s)	169, 355
HpyAV	CCTTC	7 cut(s)	129, 162, 256, 307, 755, 756, 763
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	6 cut(s)	50, 169, 389, 419, 449, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 380, 443, 455
HpyF3I	CTNAG	4 cut(s)	93, 309, 632, 757
HpySE526I	ACGT	1 cut(s)	811
Hsp92I	GRCGYC	1 cut(s)	299
Kpn2I	TCCGGA	1 cut(s)	781
Kzo9I	GATC	2 cut(s)	586, 622
LguI	GCTCTTC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	91, 611
Lsp1109I	GCAGC	5 cut(s)	97, 222, 433, 544, 572
LweI	GCATC	4 cut(s)	73, 106, 433, 657
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	2 cut(s)	217, 616
MalI	GATC	2 cut(s)	588, 624
MboI	GATC	2 cut(s)	586, 622
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	22, 171
MluCI	AATT	6 cut(s)	59, 174, 246, 504, 598, 657
MmeI	TCCRAC	2 cut(s)	252, 614
MroI	TCCGGA	1 cut(s)	781
MroXI	GAANNNNTTC	2 cut(s)	279, 745
MseI	TTAA	3 cut(s)	162, 452, 602
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	2 cut(s)	339, 707
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	339, 707
MwoI	GCNNNNNNNGC	4 cut(s)	314, 380, 443, 455
NdeII	GATC	2 cut(s)	586, 622
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	10
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	2 cut(s)	279, 745
PfeI	GAWTC	4 cut(s)	334, 669, 732, 778
PkrI	GCNGC	5 cut(s)	112, 237, 448, 559, 562
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	337, 705
PspGI	CCWGG	2 cut(s)	337, 705
PstI	CTGCAG	2 cut(s)	52, 562
PsuI	RGATCY	1 cut(s)	622
SacI	GAGCTC	1 cut(s)	22
SalI	GTCGAC	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	162, 452, 602
SatI	GCNGC	5 cut(s)	111, 236, 447, 558, 561
Sau3AI	GATC	2 cut(s)	586, 622
ScrFI	CCNGG	2 cut(s)	339, 707
SduI	GDGCHC	2 cut(s)	22, 171
SfaNI	GCATC	4 cut(s)	73, 106, 433, 657
SfcI	CTRYAG	2 cut(s)	48, 558
Sse9I	AATT	6 cut(s)	59, 174, 246, 504, 598, 657
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	2 cut(s)	337, 705
StyI	CCWWGG	1 cut(s)	727
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	2 cut(s)	354, 739
TasI	AATT	6 cut(s)	59, 174, 246, 504, 598, 657
TfiI	GAWTC	4 cut(s)	334, 669, 732, 778
Tru1I	TTAA	3 cut(s)	162, 452, 602
Tru9I	TTAA	3 cut(s)	162, 452, 602
TscAI	CASTG	2 cut(s)	621, 640
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	5 cut(s)	110, 235, 446, 557, 560
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	621, 640
VneI	GTGCAC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	174, 598
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	2 cut(s)	279, 745
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.