Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

40446160 .. 40446845

Gene Structure 686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG315200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAATTCTGCCAGTGAGAGCAAAGCGGCAATAGAGGATGCCATACATGGTGCATACATGGTCTTCATAGCAGCTGGAATGGCTGGAGGAACAGGCACAGGTGGGGCTCCTGTAGTTGCAAAAATGGCAAAGTCTCTGGGTATCTTGACTATTAGCATTGTCACGACACCATTCACCTTTGAGGAAGAAGGCGTACTATTCAAGCTCTTGAAGGAATTACAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

75

Amino Acids

7.7

Weight (kDa)

5.13

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	4 - 64	3.1e-16	Tubulin/FtsZ family, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	202, 211
AluBI	AGCT	3 cut(s)	74, 205, 223
AluI	AGCT	3 cut(s)	74, 205, 223
Alw26I	GTCTC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	27, 72
BlsI	GCNGC	2 cut(s)	28, 73
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 125
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	47, 58
CviJI	RGCY	5 cut(s)	74, 83, 107, 205, 223
CviKI_1	RGCY	5 cut(s)	74, 83, 107, 205, 223
CviQI	GTAC	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	50, 61
FaiI	YATR	5 cut(s)	44, 48, 55, 59, 68
FatI	CATG	2 cut(s)	46, 57
Fnu4HI	GCNGC	2 cut(s)	27, 72
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	27, 72
GluI	GCNGC	2 cut(s)	27, 72
GsuI	CTGGAG	1 cut(s)	105
Hin1II	CATG	2 cut(s)	50, 61
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	145, 163, 208
HpyAV	CCTTC	2 cut(s)	182, 205
HpyCH4V	TGCA	2 cut(s)	53, 119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 125
Hsp92II	CATG	2 cut(s)	50, 61
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	25, 60, 69, 78, 84, 122, 123
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	55, 197
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	4, 215
MnlI	CCTC	3 cut(s)	28, 80, 175
MspA1I	CMGCKG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	80, 125
NlaIII	CATG	2 cut(s)	50, 61
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	28, 73
PspN4I	GGNNCC	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	27, 72
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	5 cut(s)	76, 103, 179, 207, 225
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	4, 215
SsiI	CCGC	1 cut(s)	26
TasI	AATT	2 cut(s)	4, 215
TauI	GCSGC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	17, 55
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.