Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19325507 .. 19329551

Gene Structure 4045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGTCTCATGGCAAGTCACTGAAGCTATTGACTGCAGTTTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTAGCTGACGATATTTTACAACAAGGGGTGTTCATGATTCCGGGGCTGGCAAATGTCGACTTTGCTGATGTAAGGGCTATAATGGTGAATGCGGGTTCTTCATTGATGGGGATAGGAACTGCAACTGGGAAGACAAGGGCAAGAGATGCTGCTTTAAATGCCATTCAATCATCTTTATTAGATATTGTTATAGAGAGATCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACGCTATGAGGTAAATGCTGCAGCAGAGGTTTTATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGATATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTGTCAGAAGGTAGTTCAGTCGATATTCCTGATTTCTTGAAGAAGAAAAGGATGCTCACGTTATCCTGTTTGAAATGCTTCCTTTTTATTCCAATGAGTGCCTTGTCTGAGGCCTCCCAGCCTCTTCATTACCACATCAGCATCAATCTGAGGGATTTAAGTATGCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

234

Amino Acids

25.07

Weight (kDa)

5.19

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	57 - 151	5.6e-26	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	50, 132
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	359, 395
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	242, 451, 571, 604
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	2 cut(s)	28, 80
AluI	AGCT	2 cut(s)	28, 80
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	359, 395
AoxI	GGCC	2 cut(s)	476, 642
ApeKI	GCWGC	3 cut(s)	224, 335, 338
ApoI	RAATTY	1 cut(s)	376
Asp700I	GAANNNNTTC	2 cut(s)	523, 608
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	212, 526
BbvI	GCAGC	3 cut(s)	211, 322, 350
BccI	CCATC	3 cut(s)	175, 412, 464
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	3 cut(s)	36, 336, 701
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	3 cut(s)	225, 336, 339
BlsI	GCNGC	3 cut(s)	226, 337, 340
Bme1390I	CCNGG	2 cut(s)	117, 485
BmrFI	CCNGG	2 cut(s)	117, 485
BmrI	ACTGGG	3 cut(s)	40, 50, 210
BmsI	GCATC	4 cut(s)	211, 435, 573, 681
BmuI	ACTGGG	3 cut(s)	40, 50, 210
BpiI	GAAGAC	2 cut(s)	212, 526
BpmI	CTGGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	116, 505
Bse1I	ACTGG	6 cut(s)	46, 56, 205, 283, 304, 448
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	116, 505
BseGI	GGATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	424, 630, 671
BseNI	ACTGG	6 cut(s)	46, 56, 205, 283, 304, 448
BseXI	GCAGC	3 cut(s)	211, 322, 350
BseYI	CCCAGC	1 cut(s)	648
BshFI	GGCC	2 cut(s)	478, 644
BsiSI	CCGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	478, 644
Bsp143I	GATC	4 cut(s)	272, 355, 364, 400
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	478, 644
BspCNI	CTCAG	3 cut(s)	423, 631, 672
BspHI	TCATGA	1 cut(s)	108
BspMAI	CTGCAG	2 cut(s)	40, 340
BspPI	GGATC	2 cut(s)	359, 395
BsrI	ACTGG	6 cut(s)	46, 56, 205, 283, 304, 448
BssECI	CCNNGG	2 cut(s)	116, 505
BssMI	GATC	4 cut(s)	272, 355, 364, 400
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	3 cut(s)	410, 639, 680
BstF5I	GGATG	1 cut(s)	588
BstKTI	GATC	4 cut(s)	275, 358, 367, 403
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	272, 355, 364, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 233
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	115, 483
BstSFI	CTRYAG	3 cut(s)	36, 336, 701
BstV1I	GCAGC	3 cut(s)	211, 322, 350
BstV2I	GAAGAC	2 cut(s)	212, 526
BstX2I	RGATCY	2 cut(s)	272, 400
BstYI	RGATCY	2 cut(s)	272, 400
BsuRI	GGCC	2 cut(s)	478, 644
BtsCI	GGATG	1 cut(s)	588
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	3 cut(s)	20, 399, 418
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	1 cut(s)	108
CviAII	CATG	2 cut(s)	11, 109
CviJI	RGCY	7 cut(s)	28, 80, 121, 152, 478, 644, 652
CviKI_1	RGCY	7 cut(s)	28, 80, 121, 152, 478, 644, 652
DdeI	CTNAG	3 cut(s)	410, 639, 680
DpnI	GATC	4 cut(s)	274, 357, 366, 402
DpnII	GATC	4 cut(s)	272, 355, 364, 400
DraI	TTTAAA	1 cut(s)	231
DraIII	CACNNNGTG	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	2 cut(s)	14, 112
FaiI	YATR	9 cut(s)	12, 110, 155, 266, 296, 324, 352, 354, 695
FatI	CATG	2 cut(s)	10, 108
FauI	CCCGC	1 cut(s)	160
FblI	GTMKAC	2 cut(s)	50, 132
Fnu4HI	GCNGC	3 cut(s)	225, 336, 339
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	3 cut(s)	225, 336, 339
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	3 cut(s)	225, 336, 339
GsaI	CCCAGC	1 cut(s)	652
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	478, 644
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	2 cut(s)	14, 112
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	5, 112, 447, 510
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	51, 133
Hpy188I	TCNGA	3 cut(s)	538, 640, 681
Hpy188III	TCNNGA	4 cut(s)	109, 289, 560, 568
Hpy8I	GTNNAC	2 cut(s)	51, 133
HpyAV	CCTTC	2 cut(s)	533, 534
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	3 cut(s)	38, 197, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 233
HpyF3I	CTNAG	3 cut(s)	410, 639, 680
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	2 cut(s)	14, 112
Kzo9I	GATC	4 cut(s)	272, 355, 364, 400
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	211, 322, 350
LweI	GCATC	4 cut(s)	211, 435, 573, 681
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	3 cut(s)	18, 58, 394
MalI	GATC	4 cut(s)	274, 357, 366, 402
MboI	GATC	4 cut(s)	272, 355, 364, 400
MboII	GAAGA	7 cut(s)	165, 217, 473, 531, 583, 586, 647
MflI	RGATCY	2 cut(s)	272, 400
MluCI	AATT	3 cut(s)	282, 376, 435
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	9 cut(s)	58, 319, 337, 468, 538, 634, 655, 663, 675
MroXI	GAANNNNTTC	2 cut(s)	523, 608
MseI	TTAA	4 cut(s)	72, 230, 380, 689
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	117, 485
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	221, 233
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	272, 355, 364, 400
NlaIII	CATG	2 cut(s)	14, 112
NmuCI	GTSAC	2 cut(s)	18, 394
PagI	TCATGA	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	644
PctI	GAATGC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	523, 608
PfeI	GAWTC	3 cut(s)	112, 447, 510
PkrI	GCNGC	3 cut(s)	226, 337, 340
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	483
PstI	CTGCAG	2 cut(s)	40, 340
PsuI	RGATCY	2 cut(s)	272, 400
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	72, 230, 380, 689
SatI	GCNGC	3 cut(s)	225, 336, 339
Sau3AI	GATC	4 cut(s)	272, 355, 364, 400
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	117, 485
SetI	ASST	7 cut(s)	30, 82, 330, 348, 526, 544, 593
SfaNI	GCATC	4 cut(s)	211, 435, 573, 681
SfcI	CTRYAG	3 cut(s)	36, 336, 701
Sse9I	AATT	3 cut(s)	282, 376, 435
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	115, 483
StyI	CCWWGG	1 cut(s)	505
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	3 cut(s)	132, 517, 552
TasI	AATT	3 cut(s)	282, 376, 435
TfiI	GAWTC	3 cut(s)	112, 447, 510
Tru1I	TTAA	4 cut(s)	72, 230, 380, 689
Tru9I	TTAA	4 cut(s)	72, 230, 380, 689
TscAI	CASTG	3 cut(s)	27, 399, 418
TseFI	GTSAC	2 cut(s)	18, 394
TseI	GCWGC	3 cut(s)	224, 335, 338
Tsp45I	GTSAC	2 cut(s)	18, 394
TspDTI	ATGAA	3 cut(s)	97, 165, 647
TspRI	CASTG	3 cut(s)	27, 399, 418
XapI	RAATTY	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	50, 132
XmnI	GAANNNNTTC	2 cut(s)	523, 608
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.