Rroxscaffold_2G00102420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000552
Physical Location & Seq
Forward (+)
24570117 .. 24575492
5376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102420.1

Sequence Viewer

Length: 672 bp
ATGCTTGAGCACTCAGCTGCAGGTCGTTCGACTACCATCGCGCTGTCACTGAACCCTAGACCAAACGCCAGCACGGCTAGGGTTTCTGAGGCGTCTAAAATGCAGGTTGTTTCTGCTAGAATTTCCAAGTTGGTTGCATGCGTAATTCCAACTACCAAAGTTATTCACCTCCAGACTGCTCAACTAGCACAGTTTAAGTCAAAGTCGACTATGCCTATTCTAAAGGCTACTGCGCCTACTCTTCTGGCATCTCTTGTGCCCTTGGCTCTTATAACAAATAAGAAGAGGGCAGCATCATTGGCTACGGGGAATCAGATTTTCAAATTGGGTCATGTAACTGAAAGTGTTAAGTGGTGCAGACGGAGTGTCATGGCAAGACACTTAAGGAAGAGCTCTATTCTCCATTCTGAGAATTCAGATCAGTTTTCTCATGTCATTGCTGGGAGGGCTGAGTCTAGGGTGTGCTCTCATTGGACGGTTGCCCCTGCTACCAATGAGTTTGATTTATTGGCTCATAACAAGACTCAGAAGAGTTTGGATGAAGAAAATGTTGTAGAATGCCATAACATGTTTAGTGATTTGTTCATTTCAGGCACCGATTCAATTTTGGTGCTCTATGCTTCAAAGGAAACTGGGGTAATCACCACTGTCATGTATTTGGTGGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.24

Weight (kDa)

9.73

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
Acc36I ACCTGC 2 cut(s) 11, 94
AccB1I GGYRCC 1 cut(s) 593
AccI GTMKAC 1 cut(s) 206
AccII CGCG 1 cut(s) 41
AcsI RAATTY 2 cut(s) 120, 412
AcyI GRCGYC 1 cut(s) 92
AflII CTTAAG 1 cut(s) 382
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 3 cut(s) 322, 603, 624
AhdI GACNNNNNGTC 1 cut(s) 365
AluBI AGCT 2 cut(s) 17, 393
AluI AGCT 2 cut(s) 17, 393
Alw21I GWGCWC 4 cut(s) 12, 395, 467, 615
ApeKI GCWGC 3 cut(s) 17, 290, 665
ApoI RAATTY 2 cut(s) 120, 412
AspLEI GCGC 2 cut(s) 43, 235
AsuHPI GGTGA 2 cut(s) 158, 634
BaeGI GKGCMC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 593
BanII GRGCYC 1 cut(s) 395
Bbv12I GWGCWC 4 cut(s) 12, 395, 467, 615
BbvI GCAGC 3 cut(s) 4, 302, 652
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BfaI CTAG 5 cut(s) 57, 78, 117, 185, 456
BfmI CTRYAG 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 382
BfuAI ACCTGC 2 cut(s) 11, 94
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 18, 291, 666
BlsI GCNGC 3 cut(s) 19, 292, 667
BmeRI GACNNNNNGTC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 595
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 2 cut(s) 257, 302
BmuI ACTGGG 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 5 cut(s) 27, 78, 399, 441, 539
BseNI ACTGG 1 cut(s) 637
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 3 cut(s) 4, 302, 652
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 4 cut(s) 12, 395, 467, 615
BsmI GAATGC 1 cut(s) 563
Bsp1286I GDGCHC 5 cut(s) 12, 261, 395, 467, 615
Bsp143I GATC 1 cut(s) 418
BspCNI CTCAG 5 cut(s) 26, 79, 400, 442, 538
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 595
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 2 cut(s) 11, 94
BspQI GCTCTTC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 593
BspTI CTTAAG 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 3 cut(s) 192, 478, 649
Bst6I CTCTTC 4 cut(s) 246, 278, 383, 524
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 70, 139
BstDEI CTNAG 5 cut(s) 13, 87, 408, 450, 525
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 2 cut(s) 43, 235
BstKTI GATC 1 cut(s) 421
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 4 cut(s) 74, 185, 299, 446
BstNSI RCATGY 2 cut(s) 141, 571
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 4, 302, 652
BtgZI GCGATG 1 cut(s) 22
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 2 cut(s) 47, 645
BveI ACCTGC 2 cut(s) 11, 94
Cac8I GCNNGC 2 cut(s) 70, 139
CfoI GCGC 2 cut(s) 43, 235
CseI GACGC 1 cut(s) 81
CviAII CATG 6 cut(s) 138, 332, 370, 431, 568, 652
CviJI RGCY 9 cut(s) 17, 77, 227, 266, 302, 393, 449, 512, 665
CviKI_1 RGCY 9 cut(s) 17, 77, 227, 266, 302, 393, 449, 512, 665
DdeI CTNAG 5 cut(s) 13, 87, 408, 450, 525
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
DriI GACNNNNNGTC 1 cut(s) 365
Eam1104I CTCTTC 4 cut(s) 246, 278, 383, 524
Eam1105I GACNNNNNGTC 1 cut(s) 365
EarI CTCTTC 4 cut(s) 246, 278, 383, 524
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 6 cut(s) 141, 335, 373, 434, 571, 655
FatI CATG 6 cut(s) 137, 331, 369, 430, 567, 651
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 18, 291, 666
FokI GGATG 1 cut(s) 551
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 3 cut(s) 18, 291, 666
FspBI CTAG 5 cut(s) 57, 78, 117, 185, 456
GlaI GCGC 2 cut(s) 42, 234
GluI GCNGC 3 cut(s) 18, 291, 666
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 155
HgaI GACGC 1 cut(s) 81
HhaI GCGC 2 cut(s) 43, 235
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 6 cut(s) 141, 335, 373, 434, 571, 655
Hin6I GCGC 2 cut(s) 41, 233
HinP1I GCGC 2 cut(s) 41, 233
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 4 cut(s) 310, 452, 523, 599
HphI GGTGA 2 cut(s) 158, 634
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 5 cut(s) 88, 315, 409, 418, 528
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 192, 478, 649
HpyCH4V TGCA 5 cut(s) 20, 103, 137, 357, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 185, 299, 446
HpyF3I CTNAG 5 cut(s) 13, 87, 408, 450, 525
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 6 cut(s) 141, 335, 373, 434, 571, 655
HspAI GCGC 2 cut(s) 41, 233
Kzo9I GATC 1 cut(s) 418
LguI GCTCTTC 1 cut(s) 383
LpnPI CCDG 9 cut(s) 6, 82, 89, 185, 230, 426, 498, 576, 618
Lsp1109I GCAGC 3 cut(s) 4, 302, 652
LweI GCATC 2 cut(s) 257, 302
MaeI CTAG 5 cut(s) 57, 78, 117, 185, 456
MaeIII GTNAC 2 cut(s) 45, 334
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 5 cut(s) 233, 295, 400, 541, 554
MhlI GDGCHC 5 cut(s) 12, 261, 395, 467, 615
MluCI AATT 5 cut(s) 120, 144, 323, 412, 603
MlyI GAGTC 2 cut(s) 461, 517
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 82, 179, 279, 438
MseI TTAA 3 cut(s) 195, 348, 383
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 382
Mva1269I GAATGC 1 cut(s) 563
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 4 cut(s) 74, 185, 299, 446
NdeII GATC 1 cut(s) 418
NlaIII CATG 6 cut(s) 141, 335, 373, 434, 571, 655
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 45
NspI RCATGY 2 cut(s) 141, 571
PaeI GCATGC 1 cut(s) 141
PciI ACATGT 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 383
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 2 cut(s) 310, 599
PkrI GCNGC 3 cut(s) 19, 292, 667
PleI GAGTC 2 cut(s) 460, 517
PpsI GAGTC 2 cut(s) 460, 517
PscI ACATGT 1 cut(s) 567
PsiI TTATAA 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 595
PstI CTGCAG 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 395
SalI GTCGAC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 195, 348, 383
SatI GCNGC 3 cut(s) 18, 291, 666
Sau3AI GATC 1 cut(s) 418
SchI GAGTC 2 cut(s) 461, 517
SduI GDGCHC 5 cut(s) 12, 261, 395, 467, 615
SetI ASST 5 cut(s) 19, 25, 108, 171, 395
SfaNI GCATC 2 cut(s) 257, 302
SfcI CTRYAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 5, 382
SmoI CTYRAG 2 cut(s) 5, 382
SphI GCATGC 1 cut(s) 141
Sse9I AATT 5 cut(s) 120, 144, 323, 412, 603
SspMI CTAG 5 cut(s) 57, 78, 117, 185, 456
SstI GAGCTC 1 cut(s) 395
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 192, 478, 649
TaqI TCGA 2 cut(s) 29, 206
TasI AATT 5 cut(s) 120, 144, 323, 412, 603
TfiI GAWTC 2 cut(s) 310, 599
Tru1I TTAA 3 cut(s) 195, 348, 383
Tru9I TTAA 3 cut(s) 195, 348, 383
TscAI CASTG 2 cut(s) 54, 652
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 3 cut(s) 17, 290, 665
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 555, 574
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 2 cut(s) 54, 652
Vha464I CTTAAG 1 cut(s) 382
XapI RAATTY 2 cut(s) 120, 412
XceI RCATGY 2 cut(s) 141, 571
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 5 cut(s) 57, 78, 117, 185, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.