Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000327.1

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

211755 .. 213053

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000327.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgacactaccaagctttactcgtgtctcccttggccttgagttaattcccgagctgctaaatgtcgactttgctgatgtaaaggctattatggcgaatgcaggttcttcattgatggggataggaactgcaactgacatgcttgtgctggaacctatttgcctgagaggtgataactggcagaagcctgctgttctctggcatgctattcatgatgtgcttggttttctggagccaaaagaaagcttggtgatcagacgacagagatatggccatctagctttagtttatagaccttacaatgaagttagtaacatgcatatttggggcctaaagctcactgcattgaactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

6.39

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	5 cut(s)	15, 55, 246, 281, 337
AluI	AGCT	5 cut(s)	15, 55, 246, 281, 337
Alw26I	GTCTC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	34, 271, 328
ApeKI	GCWGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	182, 262
AvaI	CYCGRG	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	273
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	2 cut(s)	109, 282
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	153, 234, 329
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	42
BshFI	GGCC	3 cut(s)	36, 273, 330
BsiHKCI	CYCGRG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	36, 273, 330
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	252
BspANI	GGCC	3 cut(s)	36, 273, 330
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	153, 234, 329
BspMI	ACCTGC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	189, 204
BstDEI	CTNAG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	3 cut(s)	142, 206, 319
BstV1I	GCAGC	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	36, 273, 330
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	189, 204
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	328
CviAII	CATG	4 cut(s)	139, 203, 212, 316
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	142, 206, 215, 319
FaiI	YATR	8 cut(s)	92, 140, 204, 213, 270, 291, 317, 321
FatI	CATG	4 cut(s)	138, 202, 211, 315
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	36, 273, 330
Hin1II	CATG	4 cut(s)	142, 206, 215, 319
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	2 cut(s)	13, 244
HphI	GGTGA	2 cut(s)	182, 262
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	3 cut(s)	50, 212, 230
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	101, 131, 319, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	4 cut(s)	142, 206, 215, 319
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	7 cut(s)	87, 134, 163, 176, 184, 201, 215
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	1 cut(s)	161
Mox20I	TGGCCA	1 cut(s)	273
Mph1103I	ATGCAT	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	44, 355
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	4 cut(s)	142, 206, 215, 319
NlaIV	GGNNCC	3 cut(s)	153, 234, 329
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	3 cut(s)	142, 206, 319
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	211
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	153, 234, 329
PspPI	GGNCC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	143
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	44, 355
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	328
SetI	ASST	9 cut(s)	17, 57, 106, 157, 172, 248, 283, 298, 339
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	44, 355
Tru9I	TTAA	2 cut(s)	44, 355
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	99, 200, 318
TspRI	CASTG	1 cut(s)	346
XceI	RCATGY	3 cut(s)	142, 206, 319
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.