Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

10826064 .. 10828707

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0132600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGGACGATATTCGTTTCTTTGAGTTGAACACCGGAGCCAAGATGCCTTCTTTGGGCTTAGGGACCTGGCAGTCCAGCCCCGGCTTGGTCGGTGAAGCCGTCGCCACCGCCATCAAGGCAGGATATAGGCATATTGATTGTGCTCAAGTCTATGGCAACGAGAAAGAGATTGGTTTGGTTTTGAAGAAGCTGTTTGAAGATGGTGTGGTGAAGCGCGAAGAATTGTGGATTACCTCCAAGCTCTGGTGTACGGATCATGCGCCAGAAGATGTACCAGAGGCATTGGATAGGACTTTGAAAGACTTGCAGCTTGATTATGTTGACTTGTACTTGACCCACTGGCCAGTGCGGATGAAGAAGGGTGCAGTCGGTTTTAAGCCTGAAAACCTTGTTGAACCAGATATCCCTGGTACTTGGAGAGCAATGGAAACTCTCTATGATTCGTGCAAGGCTCGAGCTATTGGTGTGAGCAATTTCGCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGTGTTCCTCCTGCTGTTGACCAAGTGGAGTGCCATCCTTCATGGCAGCAGACCAAGCTGCGATCCTTCTGCAAATCCAAGGGGGTTCACCTTTCTGGATATTCACCACTGGGTTCTCCTGGCACAACATGGATCAAAAGTGATGTCCTTAAGAATCCGATTCTTCTCAGCGTTGCAGAGAAGCTAGGCAAAACTCTTGCTCAAGTTGCTCTTCGATGGGGACTGCAAATGGGTCATAGCGTTCTTCCAAAGAGTACTAATGAAGCAAGGATCAAGGAGAATCTCGATGTCTTTGGCTGGTCTATCCCAGAGGACTTGTTTGCCAAGTTTTCTGAAATTGAGCAGGCAAGGCTGATTAGAGGGAACTCATTTGTTCATGACACTTTTGGACCCTATAGAAATGTTGAAGAACTATGGGATGGTGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

315

Amino Acids

35.22

Weight (kDa)

6.02

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 285	5.8e-51	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	5, 111, 352
AclWI	GGATC	4 cut(s)	264, 573, 656, 794
AcoI	YGGCCR	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	518
AfaI	GTAC	5 cut(s)	253, 276, 332, 415, 772
AfiI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	6 cut(s)	31, 187, 200, 301, 398, 923
AjnI	CCWGG	3 cut(s)	68, 409, 634
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	7 cut(s)	193, 244, 313, 461, 493, 574, 700
AluI	AGCT	7 cut(s)	193, 244, 313, 461, 493, 574, 700
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	4 cut(s)	264, 573, 656, 794
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	310, 562, 574
ArsI	GACNNNNNNTTYG	4 cut(s)	479, 511, 645, 677
AspLEI	GCGC	2 cut(s)	219, 265
AspS9I	GGNCC	2 cut(s)	66, 905
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	107, 223, 596, 612
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	2 cut(s)	66, 905
BalI	TGGCCA	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	322, 561, 574
BccI	CCATC	5 cut(s)	122, 197, 558, 726, 929
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	3 cut(s)	70, 411, 636
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	2 cut(s)	701, 946
BfmI	CTRYAG	1 cut(s)	910
BfrI	CTTAAG	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	311, 563, 575
BlsI	GCNGC	3 cut(s)	312, 564, 576
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	70, 84, 411, 636
Bme18I	GGWCC	2 cut(s)	66, 905
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	66, 905
BmiI	GGNNCC	3 cut(s)	40, 67, 907
BmrFI	CCNGG	4 cut(s)	70, 84, 411, 636
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	132, 702
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	82, 409, 594
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 88, 246
Bse1I	ACTGG	3 cut(s)	347, 347, 630
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	70, 411, 636
BseDI	CCNNGG	3 cut(s)	82, 409, 594
BseGI	GGATG	4 cut(s)	360, 514, 550, 940
BseLI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	3 cut(s)	347, 347, 630
BseXI	GCAGC	3 cut(s)	322, 561, 574
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 84
BslFI	GGGAC	2 cut(s)	79, 750
BslI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BsmFI	GGGAC	2 cut(s)	79, 750
BsnI	GGCC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	256, 578, 648, 786
BspACI	CCGC	3 cut(s)	5, 111, 352
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	3 cut(s)	40, 67, 907
BspPI	GGATC	4 cut(s)	264, 573, 656, 794
BspQI	GCTCTTC	1 cut(s)	732
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	347, 347, 630
BssECI	CCNNGG	3 cut(s)	82, 409, 594
BssMI	GATC	4 cut(s)	256, 578, 648, 786
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	70, 411, 636
Bst6I	CTCTTC	1 cut(s)	732
BstAFI	CTTAAG	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	2 cut(s)	61, 683
BstF5I	GGATG	4 cut(s)	360, 514, 550, 940
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	219, 265
BstKTI	GATC	4 cut(s)	259, 581, 651, 789
BstMBI	GATC	4 cut(s)	256, 578, 648, 786
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 571, 722, 865
BstNI	CCWGG	3 cut(s)	70, 411, 636
BstSCI	CCNGG	4 cut(s)	68, 82, 409, 634
BstSFI	CTRYAG	1 cut(s)	910
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	322, 561, 574
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	4 cut(s)	360, 514, 550, 940
BtsIMutI	CAGTG	3 cut(s)	340, 354, 623
Cac8I	GCNNGC	1 cut(s)	861
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	2 cut(s)	219, 265
Cfr13I	GGNCC	2 cut(s)	66, 905
Csp6I	GTAC	5 cut(s)	252, 275, 331, 414, 771
CviAII	CATG	4 cut(s)	260, 558, 645, 893
CviQI	GTAC	5 cut(s)	252, 275, 331, 414, 771
DdeI	CTNAG	2 cut(s)	61, 683
DpnI	GATC	4 cut(s)	258, 580, 650, 788
DpnII	GATC	4 cut(s)	256, 578, 648, 786
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	594
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	66, 905
Eco72I	CACGTG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	68, 409, 634
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	4 cut(s)	263, 561, 648, 896
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	2 cut(s)	79, 750
FatI	CATG	4 cut(s)	259, 557, 644, 892
Fnu4HI	GCNGC	3 cut(s)	311, 563, 575
FokI	GGATG	3 cut(s)	367, 521, 537
Fsp4HI	GCNGC	3 cut(s)	311, 563, 575
FspBI	CTAG	2 cut(s)	701, 946
GlaI	GCGC	2 cut(s)	218, 264
GluI	GCNGC	3 cut(s)	311, 563, 575
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	2 cut(s)	36, 84
HhaI	GCGC	2 cut(s)	219, 265
Hin1II	CATG	4 cut(s)	263, 561, 648, 896
Hin6I	GCGC	2 cut(s)	217, 263
HinP1I	GCGC	2 cut(s)	217, 263
HincII	GTYRAC	2 cut(s)	325, 535
HindII	GTYRAC	2 cut(s)	325, 535
HinfI	GANTC	4 cut(s)	443, 670, 676, 796
HpaII	CCGG	2 cut(s)	36, 84
HphI	GGTGA	4 cut(s)	107, 223, 596, 612
Hpy166II	GTNNAC	4 cut(s)	252, 325, 535, 604
Hpy188I	TCNGA	3 cut(s)	499, 675, 850
Hpy188III	TCNNGA	3 cut(s)	612, 800, 893
Hpy8I	GTNNAC	4 cut(s)	252, 325, 535, 604
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	60, 355, 564, 592
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	6 cut(s)	310, 368, 450, 588, 692, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 571, 722, 865
HpyF3I	CTNAG	2 cut(s)	61, 683
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	4 cut(s)	263, 561, 648, 896
HspAI	GCGC	2 cut(s)	217, 263
Kzo9I	GATC	4 cut(s)	256, 578, 648, 786
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	3 cut(s)	322, 561, 574
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	701, 946
MaeII	ACGT	1 cut(s)	517
MalI	GATC	4 cut(s)	258, 580, 650, 788
MboI	GATC	4 cut(s)	256, 578, 648, 786
MboII	GAAGA	9 cut(s)	199, 212, 233, 281, 370, 671, 719, 752, 935
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	3 cut(s)	224, 475, 852
MluNI	TGGCCA	1 cut(s)	346
MnlI	CCTC	5 cut(s)	247, 274, 534, 820, 869
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	2 cut(s)	378, 666
Msp20I	TGGCCA	1 cut(s)	346
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	36, 84
MspR9I	CCNGG	4 cut(s)	70, 84, 411, 636
MvaI	CCWGG	3 cut(s)	70, 411, 636
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	119, 571, 722, 865
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	4 cut(s)	256, 578, 648, 786
NlaIII	CATG	4 cut(s)	263, 561, 648, 896
NlaIV	GGNNCC	3 cut(s)	40, 67, 907
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	892
PciSI	GCTCTTC	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	4 cut(s)	443, 670, 676, 796
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	312, 564, 576
PmaCI	CACGTG	1 cut(s)	518
PmlI	CACGTG	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 409, 634
PspCI	CACGTG	1 cut(s)	518
PspGI	CCWGG	3 cut(s)	68, 409, 634
PspN4I	GGNNCC	3 cut(s)	40, 67, 907
PspPI	GGNCC	2 cut(s)	66, 905
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
RsaI	GTAC	5 cut(s)	253, 276, 332, 415, 772
RsaNI	GTAC	5 cut(s)	252, 275, 331, 414, 771
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	378, 666
SatI	GCNGC	3 cut(s)	311, 563, 575
Sau3AI	GATC	4 cut(s)	256, 578, 648, 786
Sau96I	GGNCC	2 cut(s)	66, 905
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	4 cut(s)	70, 84, 411, 636
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	66, 905
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	4 cut(s)	147, 456, 665, 717
SmoI	CTYRAG	4 cut(s)	147, 456, 665, 717
Sse9I	AATT	3 cut(s)	224, 475, 852
SsiI	CCGC	3 cut(s)	5, 111, 352
SspMI	CTAG	2 cut(s)	701, 946
StyD4I	CCNGG	4 cut(s)	68, 82, 409, 634
StyI	CCWWGG	1 cut(s)	594
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	457, 730, 801
TasI	AATT	3 cut(s)	224, 475, 852
TatI	WGTACW	2 cut(s)	330, 770
TfiI	GAWTC	4 cut(s)	443, 670, 676, 796
Tru1I	TTAA	2 cut(s)	378, 666
Tru9I	TTAA	2 cut(s)	378, 666
TscAI	CASTG	3 cut(s)	347, 354, 630
TseI	GCWGC	3 cut(s)	310, 562, 574
TspDTI	ATGAA	4 cut(s)	371, 546, 792, 881
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	347, 354, 630
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	66, 905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	456
XspI	CTAG	2 cut(s)	701, 946
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.