Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30620395 .. 30624010

Gene Structure 3616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGACACGAAAAGAGGTAGGTAGGATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGTGATTCAACACCTTCAGACGGTGATCAGGTCATATATCATTGCACTGTTAGAACATTGGGTGGAGTTATTGTTGAATCTTCAAGATCAGAATTTAGTGCCTTCTATTACGGCGAGAGTGCTGTTCGTTTATATGCAGGTTCAGCTTGGGATGAACTCAAGCATACTAGGCAAACCATTGGATCCCTGGTAACATCAGAAACCCAAAAAGACATCTTTGAGCCCAGGAACAAGGGTAAGATCTACGTGATTGCTGCTAAGAAGTCTTCAGGGAAGGTGGTGACTACGAAAAGAACGAAATTCAGCGGCTTCAACGCATTCTCGAACAGAGAGGGCTACTGGAATAACATAACTGGTGGAACTGATTTGACACTATATGAGGTAAATGCAGCAGCCGAGGTTATTTATGATCTTATTGCTCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTTCTGGATTCAAACACCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACACTCGCGTTATCCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

244

Amino Acids

26.6

Weight (kDa)

9.42

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	136 - 194	4.1e-13	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AccII	CGCG	1 cut(s)	718
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	252, 265, 524
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	167, 374, 505
AcuI	CTGAAG	2 cut(s)	75, 327
AdeI	CACNNNGTG	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	74, 95
AgsI	TTSAA	6 cut(s)	84, 152, 159, 388, 580, 700
AjnI	CCWGG	4 cut(s)	67, 261, 299, 612
AluBI	AGCT	2 cut(s)	45, 221
AluI	AGCT	2 cut(s)	45, 221
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	3 cut(s)	252, 265, 524
AoxI	GGCC	2 cut(s)	36, 605
ApeKI	GCWGC	3 cut(s)	329, 464, 467
ApoI	RAATTY	3 cut(s)	167, 374, 505
Asp700I	GAANNNNTTC	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	89, 110, 367
BamHI	GGATCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	333, 655
BbvI	GCAGC	3 cut(s)	316, 476, 479
BccI	CCATC	2 cut(s)	541, 593
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	4 cut(s)	69, 263, 301, 614
BclI	TGATCA	2 cut(s)	60, 100
BcoDI	GTCTC	1 cut(s)	618
BfaI	CTAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	4 cut(s)	330, 382, 465, 468
BlsI	GCNGC	4 cut(s)	331, 383, 466, 469
Bme1390I	CCNGG	4 cut(s)	69, 263, 301, 614
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	4 cut(s)	69, 263, 301, 614
BmsI	GCATC	1 cut(s)	564
BpiI	GAAGAC	2 cut(s)	333, 655
BpmI	CTGGAG	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	5 cut(s)	261, 299, 471, 634, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 95
Bse1I	ACTGG	2 cut(s)	419, 433
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	4 cut(s)	69, 263, 301, 614
BseDI	CCNNGG	5 cut(s)	261, 299, 471, 634, 725
BseGI	GGATG	2 cut(s)	30, 232
BseLI	CCNNNNNNNGG	2 cut(s)	74, 95
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	553, 678
BseNI	ACTGG	2 cut(s)	419, 433
BseXI	GCAGC	3 cut(s)	316, 476, 479
Bsh1236I	CGCG	1 cut(s)	718
BshFI	GGCC	2 cut(s)	38, 607
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	74, 95
BsmAI	GTCTC	1 cut(s)	618
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	38, 607
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	38, 607
BspCNI	CTCAG	2 cut(s)	552, 677
BspFNI	CGCG	1 cut(s)	718
BspLI	GGNNCC	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	3 cut(s)	252, 265, 524
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	419, 433
BssECI	CCNNGG	5 cut(s)	261, 299, 471, 634, 725
BssMI	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
BssT1I	CCWWGG	2 cut(s)	634, 725
Bst2UI	CCWGG	4 cut(s)	69, 263, 301, 614
Bst4CI	ACNGT	2 cut(s)	98, 124
BstBAI	YACGTR	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	333, 539, 664
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	30, 232
BstFNI	CGCG	1 cut(s)	718
BstKTI	GATC	7 cut(s)	63, 103, 164, 260, 318, 487, 532
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 244, 500
BstNI	CCWGG	4 cut(s)	69, 263, 301, 614
BstSCI	CCNGG	4 cut(s)	67, 261, 299, 612
BstUI	CGCG	1 cut(s)	718
BstV1I	GCAGC	3 cut(s)	316, 476, 479
BstV2I	GAAGAC	2 cut(s)	333, 655
BstX2I	RGATCY	3 cut(s)	257, 315, 529
BstYI	RGATCY	3 cut(s)	257, 315, 529
BsuRI	GGCC	2 cut(s)	38, 607
BtsCI	GGATG	2 cut(s)	30, 232
BtsI	GCAGTG	2 cut(s)	63, 528
BtsIMutI	CAGTG	4 cut(s)	63, 120, 528, 547
BveI	ACCTGC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	67
CviJI	RGCY	8 cut(s)	38, 45, 221, 298, 384, 411, 470, 607
CviKI_1	RGCY	8 cut(s)	38, 45, 221, 298, 384, 411, 470, 607
DdeI	CTNAG	3 cut(s)	333, 539, 664
DpnI	GATC	7 cut(s)	62, 102, 163, 259, 317, 486, 531
DpnII	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
DraIII	CACNNNGTG	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	634, 725
Eco24I	GRGCYC	1 cut(s)	300
Eco57I	CTGAAG	2 cut(s)	75, 327
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRII	CCWGG	4 cut(s)	67, 261, 299, 612
EcoT14I	CCWWGG	2 cut(s)	634, 725
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	634, 725
FaiI	YATR	9 cut(s)	110, 112, 208, 210, 240, 425, 451, 453, 483
FbaI	TGATCA	2 cut(s)	60, 100
Fnu4HI	GCNGC	4 cut(s)	330, 382, 465, 468
FokI	GGATG	2 cut(s)	37, 239
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	4 cut(s)	330, 382, 465, 468
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	4 cut(s)	330, 382, 465, 468
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	38, 607
HapII	CCGG	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	5 cut(s)	80, 152, 576, 639, 685
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	3 cut(s)	89, 110, 367
Hpy188I	TCNGA	5 cut(s)	65, 94, 166, 274, 667
Hpy188III	TCNNGA	5 cut(s)	159, 397, 573, 689, 697
HpyAV	CCTTC	5 cut(s)	99, 187, 343, 662, 670
HpyCH4III	ACNGT	2 cut(s)	98, 124
HpyCH4IV	ACGT	2 cut(s)	321, 652
HpyCH4V	TGCA	3 cut(s)	120, 212, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 244, 500
HpyF3I	CTNAG	3 cut(s)	333, 539, 664
HpySE526I	ACGT	2 cut(s)	321, 652
Ksp22I	TGATCA	2 cut(s)	60, 100
Kzo9I	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
LmnI	GCTCC	2 cut(s)	499, 518
Lsp1109I	GCAGC	3 cut(s)	316, 476, 479
LweI	GCATC	1 cut(s)	564
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	321, 652
MaeIII	GTNAC	3 cut(s)	265, 355, 523
MalI	GATC	7 cut(s)	62, 102, 163, 259, 317, 486, 531
MboI	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
MboII	GAAGA	6 cut(s)	147, 333, 602, 660, 712, 715
MflI	RGATCY	3 cut(s)	257, 315, 529
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	167, 374, 505, 564
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	7 cut(s)	7, 68, 400, 448, 466, 597, 667
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	4 cut(s)	69, 263, 301, 614
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	4 cut(s)	69, 263, 301, 614
MvnI	CGCG	1 cut(s)	718
MwoI	GCNNNNNNNGC	3 cut(s)	218, 244, 500
NdeII	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	355, 523
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	652
PfeI	GAWTC	5 cut(s)	80, 152, 576, 639, 685
PkrI	GCNGC	4 cut(s)	331, 383, 466, 469
Ppu21I	YACGTR	1 cut(s)	322
Psp6I	CCWGG	4 cut(s)	67, 261, 299, 612
PspGI	CCWGG	4 cut(s)	67, 261, 299, 612
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	3 cut(s)	257, 315, 529
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	4 cut(s)	330, 382, 465, 468
Sau3AI	GATC	7 cut(s)	60, 100, 161, 257, 315, 484, 529
ScrFI	CCNGG	4 cut(s)	69, 263, 301, 614
SduI	GDGCHC	1 cut(s)	300
SexAI	ACCWGGT	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	4 cut(s)	167, 374, 505, 564
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	67, 261, 299, 612
StyI	CCWWGG	2 cut(s)	634, 725
TaaI	ACNGT	2 cut(s)	98, 124
TaiI	ACGT	2 cut(s)	324, 655
TaqI	TCGA	2 cut(s)	398, 646
TasI	AATT	4 cut(s)	167, 374, 505, 564
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	5 cut(s)	80, 152, 576, 639, 685
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	4 cut(s)	63, 127, 528, 547
TseFI	GTSAC	2 cut(s)	355, 523
TseI	GCWGC	3 cut(s)	329, 464, 467
Tsp45I	GTSAC	2 cut(s)	355, 523
TspDTI	ATGAA	3 cut(s)	41, 65, 243
TspRI	CASTG	4 cut(s)	63, 127, 528, 547
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	3 cut(s)	167, 374, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	652
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.