Rorug03G0132900

Cell division protein ftsZ

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
10861558 .. 10864607
3050 bp
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UTR
Exon/CDS
Intron
Rorug03G0132900.1

Sequence Viewer

Length: 468 bp
ATGAAGGAGCTGATAGGTAGACCAGGGTCGGTTAGTGGGTTACTCCTTAGAATCGGCCAATTTGGGTTTGCTGCTGCCGCCATCGGAGTCATGGTCTCCGCCGATCGCTTCGCCACATTCACCGCCTTCTGCTATTTGATTGCGTCAATGGGGCTTCAAGTGCTATGGAGCTTTGGCCTTGCTTGTCTTGATATTTATGCTTTGAGGAGAAAGAGAGACCTCCAAAATCCAATCCTAGTTAGCCTATTTGTTGTCGGTGATTGGGTAACAGCTACTCTATCACTGGCTGCTGCAAGCGCTTCAGCAGGAATAGTAATTCTTTATGCAAAAGACACAAATTTCTGCACGTCACAATGGGATATACCATGCCGGAAGTTCCAGATTTCAGTGGCTTTTGCTTTCCTTACCTGGGCCTTCATTGCCGTATCTTCTCATGTGATGTTTTGGATCCTATTAGCTTCAGTTTAG

Protein Analysis

155

Amino Acids

16.87

Weight (kDa)

9.1

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 139 1.3e-29 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AciI CCGC 3 cut(s) 78, 99, 123
AclWI GGATC 2 cut(s) 442, 455
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 285, 444
AfeI AGCGCT 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 1 cut(s) 158
AjiI CACGTC 1 cut(s) 348
AjnI CCWGG 2 cut(s) 22, 407
AluBI AGCT 4 cut(s) 10, 171, 272, 458
AluI AGCT 4 cut(s) 10, 171, 272, 458
Alw26I GTCTC 2 cut(s) 100, 210
AlwI GGATC 2 cut(s) 442, 455
Aor51HI AGCGCT 1 cut(s) 298
AoxI GGCC 3 cut(s) 55, 175, 411
ApeKI GCWGC 4 cut(s) 71, 74, 287, 290
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 112, 269
BamHI GGATCC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 58, 61, 274, 277
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 407
BciT130I CCWGG 2 cut(s) 24, 409
BcoDI GTCTC 2 cut(s) 100, 210
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 5 cut(s) 72, 75, 78, 288, 291
BlsI GCNGC 5 cut(s) 73, 76, 79, 289, 292
Bme1390I CCNGG 2 cut(s) 24, 409
BmgBI CACGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 2 cut(s) 24, 409
BoxI GACNNNNGTC 1 cut(s) 25
BsaI GGTCTC 2 cut(s) 100, 210
BsaJI CCNNGG 2 cut(s) 23, 408
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 2 cut(s) 24, 409
BseDI CCNNGG 2 cut(s) 23, 408
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 4 cut(s) 58, 61, 274, 277
BsgI GTGCAG 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 57, 177, 413
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 409
BsmAI GTCTC 2 cut(s) 100, 210
BsnI GGCC 3 cut(s) 57, 177, 413
Bso31I GGTCTC 2 cut(s) 100, 210
Bsp143I GATC 2 cut(s) 103, 447
BspACI CCGC 3 cut(s) 78, 99, 123
BspANI GGCC 3 cut(s) 57, 177, 413
BspLI GGNNCC 1 cut(s) 449
BspPI GGATC 2 cut(s) 442, 455
BspTNI GGTCTC 2 cut(s) 100, 210
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 23, 408
BssMI GATC 2 cut(s) 103, 447
Bst2UI CCWGG 2 cut(s) 24, 409
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 106, 450
BstMAI GTCTC 2 cut(s) 100, 210
BstMBI GATC 2 cut(s) 103, 447
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 77, 160, 296, 419
BstNI CCWGG 2 cut(s) 24, 409
BstPAI GACNNNNGTC 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 22, 407
BstV1I GCAGC 4 cut(s) 58, 61, 274, 277
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuRI GGCC 3 cut(s) 57, 177, 413
BtrI CACGTC 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 281, 393
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 411
CseI GACGC 1 cut(s) 132
CviAII CATG 3 cut(s) 91, 366, 434
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 105, 449
DpnII GATC 2 cut(s) 103, 447
EaeI YGGCCR 1 cut(s) 55
EciI GGCGGA 1 cut(s) 88
Eco31I GGTCTC 2 cut(s) 100, 210
Eco47III AGCGCT 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 285, 444
EcoRII CCWGG 2 cut(s) 22, 407
FaeI CATG 3 cut(s) 94, 369, 437
FaiI YATR 7 cut(s) 92, 166, 198, 324, 362, 367, 435
FatI CATG 3 cut(s) 90, 365, 433
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 5 cut(s) 72, 75, 78, 288, 291
Fsp4HI GCNGC 5 cut(s) 72, 75, 78, 288, 291
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 298
GluI GCNGC 5 cut(s) 72, 75, 78, 288, 291
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 3 cut(s) 57, 177, 413
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 132
HhaI GCGC 1 cut(s) 299
Hin1II CATG 3 cut(s) 94, 369, 437
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 51, 87
HpaII CCGG 1 cut(s) 370
HphI GGTGA 2 cut(s) 112, 269
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 188, 379
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 136, 424
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 293, 326, 345
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 160, 296, 419
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 3 cut(s) 94, 369, 437
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 103, 447
LmnI GCTCC 2 cut(s) 7, 168
LpnPI CCDG 8 cut(s) 9, 36, 269, 291, 383, 392, 394, 421
Lsp1109I GCAGC 4 cut(s) 58, 61, 274, 277
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 3 cut(s) 39, 265, 348
MalI GATC 2 cut(s) 105, 449
MboI GATC 2 cut(s) 103, 447
MboII GAAGA 1 cut(s) 420
MflI RGATCY 1 cut(s) 447
MluCI AATT 3 cut(s) 59, 315, 337
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 2 cut(s) 198, 230
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 24, 409
MvaI CCWGG 2 cut(s) 24, 409
MwoI GCNNNNNNNGC 4 cut(s) 77, 160, 296, 419
NdeII GATC 2 cut(s) 103, 447
NlaIII CATG 3 cut(s) 94, 369, 437
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 5 cut(s) 73, 76, 79, 289, 292
Ple19I CGATCG 1 cut(s) 106
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 22, 407
PspGI CCWGG 2 cut(s) 22, 407
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 411
PsuI RGATCY 1 cut(s) 447
PvuI CGATCG 1 cut(s) 106
SatI GCNGC 5 cut(s) 72, 75, 78, 288, 291
Sau3AI GATC 2 cut(s) 103, 447
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 24, 409
SetI ASST 8 cut(s) 12, 19, 173, 222, 274, 350, 410, 460
Sse9I AATT 3 cut(s) 59, 315, 337
SsiI CCGC 3 cut(s) 78, 99, 123
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 22, 407
TaiI ACGT 1 cut(s) 350
TasI AATT 3 cut(s) 59, 315, 337
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 51
TscAI CASTG 2 cut(s) 288, 393
TseFI GTSAC 1 cut(s) 348
TseI GCWGC 4 cut(s) 71, 74, 287, 290
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 17, 406
TspRI CASTG 2 cut(s) 288, 393
XapI RAATTY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.