Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30714998 .. 30717285

Gene Structure 2288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCAGAGTCAGAGGCTTCACTTATGATTTTGGACATGATTGTGCTGGAGCCTAATTACCATAATGCTTTCCATGATGGCATCATTGTGGCCAATCTTGTGAAAATTAGTGTTATGAATGACACCAAGAACTTCTCAGTTTATTGGGTTAGGTGTGAGGAGGAAGATGATCTAATCCCAAGGAAGACAAGGGCAAGAGATGCTGCGTTAAATGCCATTCAATCACCTCTATTAGATATCGGTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTCTATGAGGTAAATGCTGCAGCAGAGGTTATATATGACCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTCAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTCTCAGAAGGTAGTTCAGTTGAGATTCCGGATTTCTTGAAGAAGAAAGGACGCTCACGTTATCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

194

Amino Acids

21.37

Weight (kDa)

4.8

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	62 - 144	4.3e-25	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	538
AclWI	GGATC	2 cut(s)	338, 374
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	355
AdeI	CACNNNGTG	1 cut(s)	392
AgsI	TTSAA	3 cut(s)	221, 430, 550
AjnI	CCWGG	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	338, 374
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	90, 455
ApeKI	GCWGC	3 cut(s)	203, 314, 317
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	92
BbsI	GAAGAC	2 cut(s)	191, 505
BbvI	GCAGC	3 cut(s)	190, 301, 329
BccI	CCATC	3 cut(s)	71, 391, 443
BciT130I	CCWGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	3 cut(s)	204, 315, 318
BlsI	GCNGC	3 cut(s)	205, 316, 319
Bme1390I	CCNGG	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	3 cut(s)	90, 190, 414
BpiI	GAAGAC	2 cut(s)	191, 505
BpmI	CTGGAG	2 cut(s)	68, 446
BsaJI	CCNNGG	2 cut(s)	179, 484
BsaWI	WCCGGW	1 cut(s)	538
Bse1I	ACTGG	3 cut(s)	262, 283, 427
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	179, 484
BseMII	CTCAG	3 cut(s)	150, 403, 528
BseNI	ACTGG	3 cut(s)	262, 283, 427
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	190, 301, 329
BshFI	GGCC	2 cut(s)	92, 457
BsiSI	CCGG	1 cut(s)	539
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	92, 457
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	169, 343, 379
BspANI	GGCC	2 cut(s)	92, 457
BspCNI	CTCAG	3 cut(s)	149, 402, 527
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	338, 374
BsrI	ACTGG	3 cut(s)	262, 283, 427
BssECI	CCNNGG	2 cut(s)	179, 484
BssMI	GATC	3 cut(s)	169, 343, 379
BssT1I	CCWWGG	2 cut(s)	179, 484
Bst2UI	CCWGG	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	136, 389, 514
BstKTI	GATC	3 cut(s)	172, 346, 382
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	169, 343, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 212
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	190, 301, 329
BstV2I	GAAGAC	2 cut(s)	191, 505
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	92, 457
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 397
CseI	GACGC	1 cut(s)	570
CviAII	CATG	2 cut(s)	37, 74
CviJI	RGCY	5 cut(s)	17, 52, 92, 254, 457
CviKI_1	RGCY	5 cut(s)	17, 52, 92, 254, 457
DdeI	CTNAG	3 cut(s)	136, 389, 514
DpnI	GATC	3 cut(s)	171, 345, 381
DpnII	GATC	3 cut(s)	169, 343, 379
DraIII	CACNNNGTG	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	179, 484
Eco32I	GATATC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	462
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	179, 484
ErhI	CCWWGG	2 cut(s)	179, 484
FaeI	CATG	2 cut(s)	40, 77
FatI	CATG	2 cut(s)	36, 73
Fnu4HI	GCNGC	3 cut(s)	204, 315, 318
Fsp4HI	GCNGC	3 cut(s)	204, 315, 318
GluI	GCNGC	3 cut(s)	204, 315, 318
GsuI	CTGGAG	2 cut(s)	68, 446
HaeIII	GGCC	2 cut(s)	92, 457
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	570
Hin1II	CATG	2 cut(s)	40, 77
HinfI	GANTC	4 cut(s)	8, 426, 489, 535
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	7, 13, 517
Hpy188III	TCNNGA	3 cut(s)	268, 539, 547
HpyAV	CCTTC	3 cut(s)	512, 513, 520
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 212
HpyF3I	CTNAG	3 cut(s)	136, 389, 514
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	2 cut(s)	40, 77
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	169, 343, 379
LmnI	GCTCC	2 cut(s)	49, 368
LpnPI	CCDG	8 cut(s)	32, 243, 253, 264, 408, 449, 476, 552
Lsp1109I	GCAGC	3 cut(s)	190, 301, 329
LweI	GCATC	3 cut(s)	90, 190, 414
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	171, 345, 381
MboI	GATC	3 cut(s)	169, 343, 379
MboII	GAAGA	6 cut(s)	176, 196, 452, 510, 562, 565
MflI	RGATCY	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	5 cut(s)	55, 105, 261, 355, 414
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	9 cut(s)	7, 151, 154, 237, 243, 298, 316, 447, 517
Mox20I	TGGCCA	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	2 cut(s)	209, 359
MslI	CAYNNNNRTG	2 cut(s)	41, 86
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	200, 212
NdeII	GATC	3 cut(s)	169, 343, 379
NlaIII	CATG	2 cut(s)	40, 77
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	3 cut(s)	426, 489, 535
PkrI	GCNGC	3 cut(s)	205, 316, 319
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	41, 86
SaqAI	TTAA	2 cut(s)	209, 359
SatI	GCNGC	3 cut(s)	204, 315, 318
Sau3AI	GATC	3 cut(s)	169, 343, 379
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	8 cut(s)	155, 229, 309, 327, 339, 505, 523, 571
SfaNI	GCATC	3 cut(s)	90, 190, 414
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	41, 86
Sse9I	AATT	5 cut(s)	55, 105, 261, 355, 414
SspI	AATATT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	2 cut(s)	179, 484
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	1 cut(s)	496
TasI	AATT	5 cut(s)	55, 105, 261, 355, 414
TfiI	GAWTC	3 cut(s)	426, 489, 535
Tru1I	TTAA	2 cut(s)	209, 359
Tru9I	TTAA	2 cut(s)	209, 359
TscAI	CASTG	2 cut(s)	378, 397
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	203, 314, 317
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	378, 397
XapI	RAATTY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.