Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30567774 .. 30580036

Gene Structure 12263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGAAAAACAGTAAGAGGGTGACGTTTGTATATTCGCAGAAAGACAGCGGGCCGGGGGTGGGAGGGGTAGAGAGTGAGGGGCTTCTTTTCTTCACACAAACACACAGAGAGAGAGAGAGAGAGGGTTCTGGTTGGAATTCAAACAGGGAACTGAAGCTTCCAGAATCGATGACTCTTGAGCCACCACTCCGGATTTTTCCTCAGCCATCTGAATTTCAGGGATTTCATCGTTCTCCAACTTCCGGCGAAGCCCCCGCAACGCAGAAGCCCAAGAAAGAACCTACGGATGATGAAAAGTGTGGGCAACAAAGGCAGTGGACATCACCTTATGACGGGAAGTTAGCCCACGTGCCATCACCAACAGCTGCCAAGCGTGTCTACTTCCTTGTGTCTCCCATCTTCTGCAACAGGGTTCTGCCTTTCTTTACTCTGAATTTTGTTCTAGTCATTCCAAATGACAAGTTGTTGACTGCAGTCTCCCAGTCTACCCCAGTAACAGAGGCATTTGATCTAACTGACAATATTCTACGCAAGATGGAGTCTCATGGCAAGTCACTGAAGGTATATGCACCATACATAATTTTGATGCAAACATTTGGTTTATTTGCTACTTTAAGTAGTGAAACTGATGACACTTCCATTAATCCGACCAAAAGGGCTCTATTGTTCATTCTGACAATTCATGAGTCATTGCTGGGAAGGTGGAGTATAGGTTGTGCTCTCAGTGGGAGGGTTACCCCCACTCCCAATGTGTTCGATTCATTGGCTCATAATAAGGTGGCTCTATCAGAATGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

267

Amino Acids

29.86

Weight (kDa)

8.91

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	381, 488
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	2 cut(s)	51, 258
AcsI	RAATTY	3 cut(s)	139, 215, 436
AcuI	CTGAAG	2 cut(s)	176, 581
AcvI	CACGTG	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	62, 245, 335
AgsI	TTSAA	1 cut(s)	144
AluBI	AGCT	2 cut(s)	160, 368
AluI	AGCT	2 cut(s)	160, 368
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	3 cut(s)	399, 484, 549
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	3 cut(s)	139, 215, 436
AseI	ATTAAT	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	34, 318, 351
BanII	GRGCYC	1 cut(s)	664
BbrPI	CACGTG	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	724
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	4 cut(s)	217, 364, 407, 532
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	399, 484, 549
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	2 cut(s)	478, 488
BmsI	GCATC	1 cut(s)	579
BmuI	ACTGGG	2 cut(s)	478, 488
BoxI	GACNNNNGTC	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	4 cut(s)	700, 730, 730, 760
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 245, 335
Bse1I	ACTGG	2 cut(s)	484, 494
Bse3DI	GCAATG	1 cut(s)	692
BseAI	TCCGGA	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	3 cut(s)	62, 245, 335
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	2 cut(s)	218, 739
BseNI	ACTGG	2 cut(s)	484, 494
BseXI	GCAGC	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	697
BshFI	GGCC	1 cut(s)	55
BshVI	ATCGAT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	3 cut(s)	56, 193, 246
BslI	CCNNNNNNNGG	3 cut(s)	62, 245, 335
BsmAI	GTCTC	3 cut(s)	399, 484, 549
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	664, 724
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	511
BspACI	CCGC	2 cut(s)	51, 258
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	217, 738
BspDI	ATCGAT	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	685
BspMAI	CTGCAG	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	484, 494
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	204, 725
BstEII	GGTNACC	1 cut(s)	736
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	3 cut(s)	399, 484, 549
BstMBI	GATC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstPAI	GACNNNNGTC	1 cut(s)	476
BstPI	GGTNACC	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	55
BsuTUI	ATCGAT	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	323, 557, 733
Cac8I	GCNNGC	1 cut(s)	53
CciI	TCATGA	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	299, 334
CviAII	CATG	2 cut(s)	548, 686
DdeI	CTNAG	2 cut(s)	204, 725
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	176, 581
Eco72I	CACGTG	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	736
EcoO65I	GGTNACC	1 cut(s)	736
EcoRI	GAATTC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	664
FaeI	CATG	2 cut(s)	551, 689
FatI	CATG	2 cut(s)	547, 685
FauI	CCCGC	2 cut(s)	44, 265
FblI	GTMKAC	2 cut(s)	381, 488
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	1 cut(s)	369
GsaI	CCCAGC	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	56, 193, 246
Hin1II	CATG	2 cut(s)	551, 689
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	167, 175, 542, 689, 761
HpaII	CCGG	3 cut(s)	56, 193, 246
HphI	GGTGA	3 cut(s)	34, 318, 351
Hpy166II	GTNNAC	4 cut(s)	321, 382, 471, 489
Hpy188I	TCNGA	5 cut(s)	214, 435, 651, 678, 793
Hpy188III	TCNNGA	4 cut(s)	164, 179, 193, 686
Hpy8I	GTNNAC	4 cut(s)	321, 382, 471, 489
HpyAV	CCTTC	2 cut(s)	556, 696
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	2 cut(s)	26, 351
HpyCH4V	TGCA	4 cut(s)	408, 476, 572, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	204, 725
HpySE526I	ACGT	2 cut(s)	26, 351
Hsp92II	CATG	2 cut(s)	551, 689
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	511
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	2 cut(s)	26, 351
MaeIII	GTNAC	4 cut(s)	22, 496, 555, 736
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	3 cut(s)	16, 85, 394
MhlI	GDGCHC	2 cut(s)	664, 724
MluCI	AATT	5 cut(s)	139, 215, 436, 582, 681
MlyI	GAGTC	3 cut(s)	169, 551, 698
MmeI	TCCRAC	3 cut(s)	116, 263, 674
MnlI	CCTC	7 cut(s)	12, 59, 73, 118, 213, 496, 726
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	2 cut(s)	617, 645
MspA1I	CMGCKG	2 cut(s)	51, 368
MspI	CCGG	3 cut(s)	56, 193, 246
MspR9I	CCNGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	2 cut(s)	551, 689
NmuCI	GTSAC	2 cut(s)	22, 555
PagI	TCATGA	1 cut(s)	685
PfeI	GAWTC	2 cut(s)	167, 761
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	3 cut(s)	169, 550, 697
PmaCI	CACGTG	1 cut(s)	352
PmlI	CACGTG	1 cut(s)	352
PpsI	GAGTC	3 cut(s)	169, 550, 697
Ppu21I	YACGTR	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	645
PspCI	CACGTG	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	697
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	617, 645
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	3 cut(s)	169, 551, 698
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	664, 724
SfaNI	GCATC	1 cut(s)	579
SfcI	CTRYAG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	139, 215, 436, 582, 681
SsiI	CCGC	2 cut(s)	51, 258
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	2 cut(s)	29, 354
TaqI	TCGA	2 cut(s)	170, 759
TasI	AATT	5 cut(s)	139, 215, 436, 582, 681
TfiI	GAWTC	2 cut(s)	167, 761
Tru1I	TTAA	2 cut(s)	617, 645
Tru9I	TTAA	2 cut(s)	617, 645
TscAI	CASTG	3 cut(s)	323, 564, 733
TseFI	GTSAC	2 cut(s)	22, 555
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	2 cut(s)	22, 555
TspDTI	ATGAA	6 cut(s)	17, 218, 309, 661, 674, 753
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	323, 564, 733
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	3 cut(s)	139, 215, 436
XmiI	GTMKAC	2 cut(s)	381, 488
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.