Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

55660939 .. 55667822

Gene Structure 6884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATTCATAACAGCCTCATTGGTAACCTCTCTTTTCGATCTGTGCAGATTTTCGAATCTTCAAATCTTCAAATCTGTGGGTTATTAGCGGGTGACGGCGGTTCGCCACCATCACTGTCATCGAGGTTGTGTGCACCAGGTTTCATTGAGATGCTAAATGTCAACATTGCTGATGTAAAGGCTATAATGGCGAATGCGGGTTCTTCATTGATGGGAATAGGAACTGCAACTGTTCATCATAAGGCTACCGAACTATATCCACATGCTTGTAATGATGAGTTTCCCATAATAGACCAAAACAGAAGGCCTAAAGTGGCCGGACACACCCTCACGCGCCGCTACCACCGACCATCAAATCGTGGTTCGGGCCTCTATCAAAATCTTGCGTACAACATCCAACAACTTTTACAACTACCACAACATCCAATTTCAATCGAGGGAGCCGGAATTTACCTCAAAAGTTTTGATTGGCCTATGACAGAATGTTATCAAAGCCACTCCCTAGCTGGAAGAGTGTCGACGAGGGCGGTGAGCCCCTATGCGAGGGGCGGGGGAGTGGAGGTGGATTGTGAGATCTCACATCGGCGGGGGAGAGGTGGTGATGTGCTTTATCTATGCGGACTCACCTCCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

211

Amino Acids

22.89

Weight (kDa)

8.57

Isoelectric Point (pI)

62.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	334
AciI	CCGC	8 cut(s)	89, 99, 197, 337, 527, 549, 586, 618
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	447
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	63, 71, 432
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	136
Alw44I	GTGCAC	1 cut(s)	132
AoxI	GGCC	4 cut(s)	305, 315, 367, 470
ApaLI	GTGCAC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	4 cut(s)	104, 541, 611, 616
AsuII	TTCGAA	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	3 cut(s)	118, 205, 358
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	503
BglII	AGATCT	1 cut(s)	573
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	54
BsaXI	ACNNNNNCTCC	4 cut(s)	546, 576, 583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	393, 421
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	4 cut(s)	307, 317, 369, 472
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	318, 444
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	4 cut(s)	307, 317, 369, 472
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	136, 536
Bsp143I	GATC	2 cut(s)	38, 573
BspACI	CCGC	8 cut(s)	89, 99, 197, 337, 527, 549, 586, 618
BspANI	GGCC	4 cut(s)	307, 317, 369, 472
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	165
BssMI	GATC	2 cut(s)	38, 573
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	117, 232
Bst6I	CTCTTC	1 cut(s)	505
BstBI	TTCGAA	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	23
BstENI	CCTNNNNNAGG	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	393, 421
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	2 cut(s)	41, 576
BstMBI	GATC	2 cut(s)	38, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	4 cut(s)	307, 317, 369, 472
BtsCI	GGATG	2 cut(s)	393, 421
BtsIMutI	CAGTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	367
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	2 cut(s)	40, 575
DpnII	GATC	2 cut(s)	38, 573
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	536
FaeI	CATG	1 cut(s)	266
FatI	CATG	1 cut(s)	262
FauI	CCCGC	4 cut(s)	82, 190, 542, 579
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	2 cut(s)	380, 408
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	307, 317, 369, 472
HapII	CCGG	2 cut(s)	318, 444
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	2 cut(s)	163, 519
HindII	GTYRAC	2 cut(s)	163, 519
HinfI	GANTC	3 cut(s)	4, 56, 621
HpaII	CCGG	2 cut(s)	318, 444
HphI	GGTGA	4 cut(s)	104, 541, 611, 616
Hpy166II	GTNNAC	3 cut(s)	134, 163, 519
Hpy8I	GTNNAC	3 cut(s)	134, 163, 519
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	2 cut(s)	117, 232
HpyCH4V	TGCA	3 cut(s)	46, 134, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	38, 573
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	5 cut(s)	123, 150, 331, 457, 492
LweI	GCATC	1 cut(s)	141
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	23, 92
MalI	GATC	2 cut(s)	40, 575
MboI	GATC	2 cut(s)	38, 573
MboII	GAAGA	4 cut(s)	51, 59, 195, 522
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	136, 536
MluCI	AATT	2 cut(s)	426, 447
MlyI	GAGTC	1 cut(s)	615
MmeI	TCCRAC	1 cut(s)	421
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	2 cut(s)	318, 444
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	38, 573
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	307
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	4, 56
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	136
PspEI	GGTNACC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	517
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	38, 573
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	136, 536
SetI	ASST	8 cut(s)	30, 128, 142, 456, 508, 564, 598, 629
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	426, 447
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	8 cut(s)	89, 99, 197, 337, 527, 549, 586, 618
SspMI	CTAG	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	117, 232
TaqI	TCGA	5 cut(s)	37, 54, 122, 435, 518
TasI	AATT	2 cut(s)	426, 447
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	4, 56
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	133, 195, 224
TspRI	CASTG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	132
XagI	CCTNNNNNAGG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.