Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

88966 .. 90898

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgattgtgctggaacctaattaccacagtgccttccatgatggcatcactggggctaaccttgtgaaaataactgttgtgaatgacatcaagaacttctcagtttatgggcagttcatttcagcagagcctatttccttgtgcgaggcaattgacccctggaagagaagggcaagagatgctctgttaaatgccattcaatcacctctattagacatcggtatagagagggttactggaattgtctggaacataactggtggagttgatttgacactctatgaggtaaatgctgcagccgaggttgtatatgatcttgctgattcaacagcaaatttaatatttggagcagtgacagatccatcactccgtggtcaagttagcatcactctaattgcttctggattgaaacgccaagaagaaagtgatgggaggccactccaggcgcaaggagacattacccttggaatcagtcaaagactttcctccttctcagaaggcagttcagtcgagattcctgatttcttgatgaagaaaggatgctcacgttatccaagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

187

Amino Acids

20.29

Weight (kDa)

4.9

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	334
AdeI	CACNNNGTG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	200, 327, 409
AjnI	CCWGG	2 cut(s)	158, 441
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	293, 296
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	280, 308
BccI	CCATC	3 cut(s)	35, 370, 422
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	2 cut(s)	160, 443
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	294, 297
BlsI	GCNGC	2 cut(s)	295, 298
Bme1390I	CCNGG	2 cut(s)	160, 443
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	160, 443
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	4 cut(s)	54, 169, 393, 530
BmuI	ACTGGG	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	158, 300, 370, 463
Bse1I	ACTGG	3 cut(s)	55, 241, 262
BseBI	CCWGG	2 cut(s)	160, 443
BseDI	CCNNGG	4 cut(s)	158, 300, 370, 463
BseGI	GGATG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	114, 507
BseNI	ACTGG	3 cut(s)	55, 241, 262
BseXI	GCAGC	2 cut(s)	280, 308
BshFI	GGCC	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	313, 358
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	113, 506
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	55, 241, 262
BssECI	CCNNGG	4 cut(s)	158, 300, 370, 463
BssMI	GATC	2 cut(s)	313, 358
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	160, 443
Bst4CI	ACNGT	2 cut(s)	29, 76
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	100, 493
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	316, 361
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	313, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	2 cut(s)	160, 443
BstSCI	CCNGG	2 cut(s)	158, 441
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	280, 308
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	436
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	545
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	34, 48, 357
CfoI	GCGC	1 cut(s)	448
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	56, 130, 299, 436
CviKI_1	RGCY	4 cut(s)	56, 130, 299, 436
DdeI	CTNAG	2 cut(s)	100, 493
DpnI	GATC	2 cut(s)	315, 360
DpnII	GATC	2 cut(s)	313, 358
DraIII	CACNNNGTG	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	158, 441
EcoT14I	CCWWGG	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	1 cut(s)	41
FaiI	YATR	7 cut(s)	39, 108, 224, 254, 282, 310, 312
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	294, 297
FokI	GGATG	1 cut(s)	552
Fsp4HI	GCNGC	2 cut(s)	294, 297
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	294, 297
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	436
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	323, 468, 514
HphI	GGTGA	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	6 cut(s)	91, 247, 402, 511, 518, 526
HpyAV	CCTTC	4 cut(s)	43, 162, 491, 499
HpyCH4III	ACNGT	2 cut(s)	29, 76
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	100, 493
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	313, 358
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	2 cut(s)	280, 308
LweI	GCATC	4 cut(s)	54, 169, 393, 530
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	2 cut(s)	232, 352
MalI	GATC	2 cut(s)	315, 360
MboI	GATC	2 cut(s)	313, 358
MboII	GAAGA	3 cut(s)	175, 431, 544
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	5 cut(s)	19, 150, 240, 334, 393
MnlI	CCTC	7 cut(s)	139, 216, 222, 277, 295, 426, 496
MseI	TTAA	2 cut(s)	188, 338
MspR9I	CCNGG	2 cut(s)	160, 443
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	160, 443
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	313, 358
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	323, 468, 514
PkrI	GCNGC	2 cut(s)	295, 298
Psp6I	CCWGG	2 cut(s)	158, 441
PspGI	CCWGG	2 cut(s)	158, 441
PspN4I	GGNNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	188, 338
SatI	GCNGC	2 cut(s)	294, 297
Sau3AI	GATC	2 cut(s)	313, 358
ScrFI	CCNGG	2 cut(s)	160, 443
SetI	ASST	6 cut(s)	19, 63, 208, 288, 306, 550
SfaNI	GCATC	4 cut(s)	54, 169, 393, 530
SfcI	CTRYAG	1 cut(s)	294
Sse9I	AATT	5 cut(s)	19, 150, 240, 334, 393
SspI	AATATT	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	158, 441
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	29, 76
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	1 cut(s)	510
TasI	AATT	5 cut(s)	19, 150, 240, 334, 393
TfiI	GAWTC	3 cut(s)	323, 468, 514
Tru1I	TTAA	2 cut(s)	188, 338
Tru9I	TTAA	2 cut(s)	188, 338
TscAI	CASTG	3 cut(s)	34, 55, 357
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	293, 296
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	106, 545
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	3 cut(s)	34, 55, 357
XapI	RAATTY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.