Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

18949421 .. 18958277

Gene Structure 8857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCATCTGTGGGAAATTCCAGGAAATGAAAGCGAAAAAGCAATTCACTCTCTTTCCTGTCCTGGGAATAGCAAACAAACCCAGTATGGGAAGACAAGGGAAAGAGATGCTGCGTTAAATGCCATTCAATCACCTTTATTTGATATTGGTATAGAGAGGGCTACTGGAATGGTCTGGAACATAACTGGTGGAACTGATTTGACACTATATGAGGTAAATGCAGCAGCTGAGGTTATTTATGATCTTATTGACCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGTTCAAGTTAGCATCACTCTAATTACTTCTGGATTCAAACACCAAGAAGAAAGTGATGGGAGGCCAATCCAGGCACAAGGATACATTACCCTTGGAATCAATCGAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACACTCACGTTATCCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

5.79

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	29 - 113	1.2e-21	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	15, 262
AdeI	CACNNNGTG	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	63, 87
AgsI	TTSAA	4 cut(s)	128, 305, 337, 457
AjnI	CCWGG	3 cut(s)	19, 61, 369
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	3 cut(s)	110, 221, 224
ApoI	RAATTY	2 cut(s)	15, 262
Asp700I	GAANNNNTTC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	98, 412
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	97, 233, 236
BccI	CCATC	2 cut(s)	298, 350
BciT130I	CCWGG	3 cut(s)	21, 63, 371
BciVI	GTATCC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	111, 222, 225
BlsI	GCNGC	3 cut(s)	112, 223, 226
Bme1390I	CCNGG	3 cut(s)	21, 63, 371
BmrFI	CCNGG	3 cut(s)	21, 63, 371
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	3 cut(s)	13, 97, 321
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	2 cut(s)	98, 412
Bpu10I	CCTNAGC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	62, 391, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 87
Bse1I	ACTGG	3 cut(s)	82, 169, 190
BseBI	CCWGG	3 cut(s)	21, 63, 371
BseDI	CCNNGG	3 cut(s)	62, 391, 482
BseLI	CCNNNNNNNGG	2 cut(s)	63, 87
BseMII	CTCAG	3 cut(s)	219, 310, 435
BseNI	ACTGG	3 cut(s)	82, 169, 190
BseXI	GCAGC	3 cut(s)	97, 233, 236
BshFI	GGCC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	63, 87
BsnI	GGCC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	241, 286
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	3 cut(s)	220, 309, 434
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	82, 169, 190
BssECI	CCNNGG	3 cut(s)	62, 391, 482
BssMI	GATC	2 cut(s)	241, 286
BssT1I	CCWWGG	2 cut(s)	391, 482
Bst2UI	CCWGG	3 cut(s)	21, 63, 371
BstDEI	CTNAG	3 cut(s)	228, 296, 421
BstKTI	GATC	2 cut(s)	244, 289
BstMBI	GATC	2 cut(s)	241, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	3 cut(s)	21, 63, 371
BstSCI	CCNGG	3 cut(s)	19, 61, 369
BstV1I	GCAGC	3 cut(s)	97, 233, 236
BstV2I	GAAGAC	2 cut(s)	98, 412
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 304
CaiI	CAGNNNCTG	1 cut(s)	227
CviJI	RGCY	3 cut(s)	161, 227, 364
CviKI_1	RGCY	3 cut(s)	161, 227, 364
DdeI	CTNAG	3 cut(s)	228, 296, 421
DpnI	GATC	2 cut(s)	243, 288
DpnII	GATC	2 cut(s)	241, 286
DraIII	CACNNNGTG	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	391, 482
EcoRII	CCWGG	3 cut(s)	19, 61, 369
EcoT14I	CCWWGG	2 cut(s)	391, 482
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	391, 482
FaiI	YATR	6 cut(s)	87, 152, 182, 208, 210, 240
Fnu4HI	GCNGC	3 cut(s)	111, 222, 225
Fsp4HI	GCNGC	3 cut(s)	111, 222, 225
GluI	GCNGC	3 cut(s)	111, 222, 225
HaeIII	GGCC	1 cut(s)	364
HinfI	GANTC	3 cut(s)	333, 396, 442
HphI	GGTGA	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	175, 330, 446, 454
HpyAV	CCTTC	2 cut(s)	419, 427
HpyCH4IV	ACGT	2 cut(s)	409, 475
HpyCH4V	TGCA	2 cut(s)	4, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	3 cut(s)	228, 296, 421
HpySE526I	ACGT	2 cut(s)	409, 475
Kzo9I	GATC	2 cut(s)	241, 286
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	3 cut(s)	97, 233, 236
LweI	GCATC	3 cut(s)	13, 97, 321
MaeII	ACGT	2 cut(s)	409, 475
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	243, 288
MboI	GATC	2 cut(s)	241, 286
MboII	GAAGA	5 cut(s)	103, 359, 417, 469, 472
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	4 cut(s)	15, 42, 262, 321
MnlI	CCTC	5 cut(s)	150, 205, 223, 354, 424
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	2 cut(s)	116, 266
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	21, 63, 371
MvaI	CCWGG	3 cut(s)	21, 63, 371
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	241, 286
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	333, 396, 442
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	112, 223, 226
Psp6I	CCWGG	3 cut(s)	19, 61, 369
PspGI	CCWGG	3 cut(s)	19, 61, 369
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	116, 266
SatI	GCNGC	3 cut(s)	111, 222, 225
Sau3AI	GATC	2 cut(s)	241, 286
ScrFI	CCNGG	3 cut(s)	21, 63, 371
SetI	ASST	6 cut(s)	136, 216, 229, 234, 412, 478
SfaNI	GCATC	3 cut(s)	13, 97, 321
Sse9I	AATT	4 cut(s)	15, 42, 262, 321
SspI	AATATT	1 cut(s)	270
StyD4I	CCNGG	3 cut(s)	19, 61, 369
StyI	CCWWGG	2 cut(s)	391, 482
TaiI	ACGT	2 cut(s)	412, 478
TaqI	TCGA	1 cut(s)	403
TasI	AATT	4 cut(s)	15, 42, 262, 321
TfiI	GAWTC	3 cut(s)	333, 396, 442
Tru1I	TTAA	2 cut(s)	116, 266
Tru9I	TTAA	2 cut(s)	116, 266
TscAI	CASTG	2 cut(s)	285, 304
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	110, 221, 224
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	285, 304
XapI	RAATTY	2 cut(s)	15, 262
XmnI	GAANNNNTTC	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.