Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19142624 .. 19162040

Gene Structure 19417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG212200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTGAATGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTGCCATCACCTCAGTGTTCAAATAATGAATCTTCGAAAAGTGGAAAGAAGGCAACGAAAGTATGCCGCGGAACTCCTCGACATGGACAGACTGCTAGAGCACTTGCAAAACAGGCAAACGGAACTGAGGATAATGCTAGAAAATTGAAACTGATAGTAATTCCAAATGACAAGCTATTGACTGCAGTTTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTAGCTGACGATATTTTACAACAAGGGGTGTTCATGATTCCGGGGCTGGCAAATGTCGACTTTGCTGATGTAAGGGCTATAATGGTGAATGCGGGTTCTTCATTGATGGGGATAGGAACTGCAACTGGGAAGACAAGGGCAAGAGATGCTGCTTTAAATGCCATTCAATCATCTTTATTAGATATTGTTATAGAGAGATCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACGCTATGAGGTAAATGCTGCAGCAGAGGTTTTATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGATATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTGTCAGAAGGTAGTTCAGTCGATATTCCTGATTTCTTGAAGAAGAAAAGGATGCTCACGTTATCCTGTTTGAAATGCTTCCTTTTTATTCCAATGAGTGCCTTGTCTGAGGCCTCCCAGCCTCTTCATTACCACATCAGCATCAATCTGAGGGATTTAAGTATGCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

356

Amino Acids

38.52

Weight (kDa)

8.29

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	3 - 96	2.4e-28	PRONE (Plant-specific Rop nucleotide exchanger)
FtsZ_C	PF12327	179 - 273	1.3e-25	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	416, 498
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	286, 288, 533
AclWI	GGATC	2 cut(s)	725, 761
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	742
AdeI	CACNNNGTG	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	9 cut(s)	8, 119, 132, 240, 367, 608, 817, 937, 970
AjnI	CCWGG	2 cut(s)	196, 849
AleI	CACNNNNGTG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	59, 394, 446
AluI	AGCT	3 cut(s)	59, 394, 446
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	725, 761
AoxI	GGCC	3 cut(s)	28, 842, 1008
ApeKI	GCWGC	4 cut(s)	220, 590, 701, 704
ApoI	RAATTY	1 cut(s)	742
Asp700I	GAANNNNTTC	2 cut(s)	889, 974
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	219, 538
AsuII	TTCGAA	1 cut(s)	254
BauI	CACGAG	1 cut(s)	60
BbsI	GAAGAC	2 cut(s)	578, 892
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	207, 577, 688, 716
BccI	CCATC	5 cut(s)	207, 232, 541, 778, 830
BciT130I	CCWGG	2 cut(s)	198, 851
BciVI	GTATCC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	483
BfaI	CTAG	3 cut(s)	315, 357, 443
BfmI	CTRYAG	3 cut(s)	402, 702, 1067
BfrI	CTTAAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	5 cut(s)	221, 286, 591, 702, 705
BlsI	GCNGC	5 cut(s)	222, 287, 592, 703, 706
Bme1390I	CCNGG	3 cut(s)	198, 483, 851
BmrFI	CCNGG	3 cut(s)	198, 483, 851
BmrI	ACTGGG	3 cut(s)	406, 416, 576
BmsI	GCATC	5 cut(s)	99, 577, 801, 939, 1047
BmuI	ACTGGG	3 cut(s)	406, 416, 576
BpiI	GAAGAC	2 cut(s)	578, 892
BpmI	CTGGAG	2 cut(s)	180, 833
Bpu14I	TTCGAA	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	286, 482, 871
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	6 cut(s)	412, 422, 571, 649, 670, 814
BseBI	CCWGG	2 cut(s)	198, 851
BseDI	CCNNGG	3 cut(s)	286, 482, 871
BseGI	GGATG	1 cut(s)	954
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	6 cut(s)	135, 245, 336, 790, 996, 1037
BseNI	ACTGG	6 cut(s)	412, 422, 571, 649, 670, 814
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	4 cut(s)	207, 577, 688, 716
BseYI	CCCAGC	1 cut(s)	1014
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	30, 844, 1010
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	31, 482
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	3 cut(s)	30, 844, 1010
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	638, 721, 730, 766
BspACI	CCGC	3 cut(s)	286, 288, 533
BspANI	GGCC	3 cut(s)	30, 844, 1010
BspCNI	CTCAG	6 cut(s)	136, 244, 337, 789, 997, 1038
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	474
BspMAI	CTGCAG	2 cut(s)	406, 706
BspPI	GGATC	2 cut(s)	725, 761
BspT104I	TTCGAA	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	92
BsrI	ACTGG	6 cut(s)	412, 422, 571, 649, 670, 814
BssECI	CCNNGG	3 cut(s)	286, 482, 871
BssMI	GATC	4 cut(s)	638, 721, 730, 766
BssSI	CACGAG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	871
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	198, 851
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	1026
BstAFI	CTTAAG	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	6 cut(s)	144, 231, 345, 776, 1005, 1046
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	954
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	4 cut(s)	641, 724, 733, 769
BstMBI	GATC	4 cut(s)	638, 721, 730, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 587, 599
BstNI	CCWGG	2 cut(s)	198, 851
BstSCI	CCNGG	3 cut(s)	196, 481, 849
BstSFI	CTRYAG	3 cut(s)	402, 702, 1067
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	207, 577, 688, 716
BstV2I	GAAGAC	2 cut(s)	578, 892
BstX2I	RGATCY	2 cut(s)	638, 766
BstYI	RGATCY	2 cut(s)	638, 766
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	30, 844, 1010
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	954
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	239, 765, 784
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	474
Cfr42I	CCGCGG	1 cut(s)	289
CviAII	CATG	2 cut(s)	302, 475
DdeI	CTNAG	6 cut(s)	144, 231, 345, 776, 1005, 1046
DpnI	GATC	4 cut(s)	640, 723, 732, 768
DpnII	GATC	4 cut(s)	638, 721, 730, 766
DraI	TTTAAA	1 cut(s)	597
DraIII	CACNNNGTG	1 cut(s)	779
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	1026
EarI	CTCTTC	1 cut(s)	1026
Eco130I	CCWWGG	1 cut(s)	871
Eco147I	AGGCCT	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	196, 849
EcoT14I	CCWWGG	1 cut(s)	871
ErhI	CCWWGG	1 cut(s)	871
FaeI	CATG	2 cut(s)	305, 478
FatI	CATG	2 cut(s)	301, 474
FauI	CCCGC	1 cut(s)	526
FblI	GTMKAC	2 cut(s)	416, 498
Fnu4HI	GCNGC	5 cut(s)	221, 286, 591, 702, 705
FokI	GGATG	1 cut(s)	961
Fsp4HI	GCNGC	5 cut(s)	221, 286, 591, 702, 705
FspBI	CTAG	3 cut(s)	315, 357, 443
GluI	GCNGC	5 cut(s)	221, 286, 591, 702, 705
GsaI	CCCAGC	1 cut(s)	1018
GsuI	CTGGAG	2 cut(s)	180, 833
HaeIII	GGCC	3 cut(s)	30, 844, 1010
HapII	CCGG	2 cut(s)	31, 482
Hin1II	CATG	2 cut(s)	305, 478
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	7 cut(s)	49, 104, 128, 248, 478, 813, 876
HpaII	CCGG	2 cut(s)	31, 482
HphI	GGTGA	2 cut(s)	219, 538
Hpy166II	GTNNAC	2 cut(s)	417, 499
Hpy188I	TCNGA	5 cut(s)	54, 204, 904, 1006, 1047
Hpy188III	TCNNGA	4 cut(s)	475, 655, 926, 934
Hpy8I	GTNNAC	2 cut(s)	417, 499
HpyAV	CCTTC	5 cut(s)	155, 173, 262, 899, 900
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	956
HpyCH4V	TGCA	5 cut(s)	65, 326, 404, 563, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 587, 599
HpyF3I	CTNAG	6 cut(s)	144, 231, 345, 776, 1005, 1046
HpySE526I	ACGT	1 cut(s)	956
Hsp92II	CATG	2 cut(s)	305, 478
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	638, 721, 730, 766
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	4 cut(s)	207, 577, 688, 716
LweI	GCATC	5 cut(s)	99, 577, 801, 939, 1047
MaeI	CTAG	3 cut(s)	315, 357, 443
MaeII	ACGT	1 cut(s)	956
MaeIII	GTNAC	2 cut(s)	424, 760
MalI	GATC	4 cut(s)	640, 723, 732, 768
MboI	GATC	4 cut(s)	638, 721, 730, 766
MboII	GAAGA	9 cut(s)	74, 243, 531, 583, 839, 897, 949, 952, 1013
MflI	RGATCY	2 cut(s)	638, 766
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	5 cut(s)	362, 378, 648, 742, 801
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	81, 758
MroXI	GAANNNNTTC	2 cut(s)	889, 974
MseI	TTAA	5 cut(s)	93, 438, 596, 746, 1055
MslI	CAYNNNNRTG	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	2 cut(s)	31, 482
MspR9I	CCNGG	3 cut(s)	198, 483, 851
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	198, 851
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	332, 587, 599
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	4 cut(s)	638, 721, 730, 766
NlaIII	CATG	2 cut(s)	305, 478
NmuCI	GTSAC	1 cut(s)	760
NspV	TTCGAA	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	232
PagI	TCATGA	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	1010
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	2 cut(s)	889, 974
PfeI	GAWTC	6 cut(s)	49, 128, 248, 478, 813, 876
PkrI	GCNGC	5 cut(s)	222, 287, 592, 703, 706
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	196, 849
PspFI	CCCAGC	1 cut(s)	1014
PspGI	CCWGG	2 cut(s)	196, 849
PstI	CTGCAG	2 cut(s)	406, 706
PsuI	RGATCY	2 cut(s)	638, 766
RseI	CAYNNNNRTG	1 cut(s)	232
SacII	CCGCGG	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	497
SaqAI	TTAA	5 cut(s)	93, 438, 596, 746, 1055
SatI	GCNGC	5 cut(s)	221, 286, 591, 702, 705
Sau3AI	GATC	4 cut(s)	638, 721, 730, 766
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	198, 483, 851
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	5 cut(s)	99, 577, 801, 939, 1047
SfcI	CTRYAG	3 cut(s)	402, 702, 1067
Sfr303I	CCGCGG	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	5 cut(s)	362, 378, 648, 742, 801
SseBI	AGGCCT	1 cut(s)	1010
SsiI	CCGC	3 cut(s)	286, 288, 533
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	3 cut(s)	315, 357, 443
StuI	AGGCCT	1 cut(s)	1010
StyD4I	CCNGG	3 cut(s)	196, 481, 849
StyI	CCWWGG	1 cut(s)	871
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	959
TaqI	TCGA	6 cut(s)	107, 254, 298, 498, 883, 918
TasI	AATT	5 cut(s)	362, 378, 648, 742, 801
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	6 cut(s)	49, 128, 248, 478, 813, 876
Tru1I	TTAA	5 cut(s)	93, 438, 596, 746, 1055
Tru9I	TTAA	5 cut(s)	93, 438, 596, 746, 1055
TscAI	CASTG	3 cut(s)	239, 765, 784
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	4 cut(s)	220, 590, 701, 704
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	4 cut(s)	261, 463, 531, 1013
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	3 cut(s)	239, 765, 784
Vha464I	CTTAAG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	742
XmiI	GTMKAC	2 cut(s)	416, 498
XmnI	GAANNNNTTC	2 cut(s)	889, 974
XspI	CTAG	3 cut(s)	315, 357, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.