Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19210744 .. 19295649

Gene Structure 84906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAATCCTCTCCGCGTAATTATCAACATGCATTTGAGAATGCAAAGCATGTGGCCGACAGAGGCATGAGCGGAGCTTGCCAGCGGTGGAAGCTTAGCCTATTACCTAGTCTAGGATCCAGAGGTGCTGGAATCTTTGGCCGGCGGAGCGGAACGTTGGCCAGCGGAGCGGAACCCTGGTCTAACCCAGTAACAGAGGTATTTAATCTAGCTGACGATATTCTACAACAAGATGTTCGTGGATGCACAGATAGTCAGCTGAAGTATGAAATATATTACGAATACAATCCGGGAAGTAAAGAAACCCGCAGAATTGCGCAGGCTTATGCACTGATCGTGGAGTGCAATGTAAACAATACGTTTCCGAGTCTACCCACCCCAGTAACAGAGGCATTTAATCTAGCTGACGATATTCTACGACAAGGTGTTTGTGGTATCTCTGATATAATCACGGAAGAGAGGGCAAGAGATGCTCCGTTAAATGCCATTCAATCACCTCTATTAGATATCGGTATAGAGAGGGTTACTGGAATTCTCTGGAACATAACTGGTGGAGTTGATTTGACACTCTATGAGGTAAATGCTGCAGCCGAGGTTGTATATGATCTTGCTGATTCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCCGTGGTCAAGTTAGCATCACTCTAATTGCTTCTGGATTGAAACGCCTAGAAGAAAATGATGGGAGGCCACTCCAGGCGCAAGGAGACATTACCCTTGGAATCAGTCAAAGACTTTCCTCCTTCTCAGAAGGCAGTTCAGTCGAGATTCCCGATTTCTTGATGAAGAAAGGACGCTCACGTTATCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

284

Amino Acids

30.98

Weight (kDa)

4.96

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	145 - 234	4.6e-22	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
AccBSI	CCGCTC	3 cut(s)	72, 150, 170
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	16
AciI	CCGC	8 cut(s)	14, 72, 85, 145, 150, 165, 170, 307
AclI	AACGTT	1 cut(s)	155
AclWI	GGATC	3 cut(s)	111, 124, 644
AcoI	YGGCCR	3 cut(s)	54, 139, 159
AcsI	RAATTY	2 cut(s)	531, 625
AcuI	CTGAAG	1 cut(s)	281
AdeI	CACNNNGTG	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	491, 618, 700
AjnI	CCWGG	2 cut(s)	176, 732
AluBI	AGCT	5 cut(s)	77, 94, 212, 259, 404
AluI	AGCT	5 cut(s)	77, 94, 212, 259, 404
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	3 cut(s)	111, 124, 644
AoxI	GGCC	4 cut(s)	54, 139, 159, 725
ApeKI	GCWGC	2 cut(s)	584, 587
ApoI	RAATTY	2 cut(s)	531, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AspLEI	GCGC	2 cut(s)	319, 739
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	571, 599
BccI	CCATC	2 cut(s)	661, 713
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciT130I	CCWGG	2 cut(s)	178, 734
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	5 cut(s)	108, 113, 209, 401, 707
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	2 cut(s)	585, 588
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	2 cut(s)	586, 589
Bme1390I	CCNGG	3 cut(s)	178, 291, 734
BmiI	GGNNCC	2 cut(s)	118, 174
BmrFI	CCNGG	3 cut(s)	178, 291, 734
BmrI	ACTGGG	2 cut(s)	182, 374
BmsI	GCATC	3 cut(s)	233, 460, 684
BmuI	ACTGGG	2 cut(s)	182, 374
BpmI	CTGGAG	1 cut(s)	716
Bpu1102I	GCTNAGC	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	4 cut(s)	176, 591, 661, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	4 cut(s)	188, 380, 532, 553
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	178, 734
BseDI	CCNNGG	4 cut(s)	176, 591, 661, 754
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	4 cut(s)	188, 380, 532, 553
BseXI	GCAGC	2 cut(s)	571, 599
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	56, 141, 161, 727
BsiSI	CCGG	2 cut(s)	142, 290
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	4 cut(s)	56, 141, 161, 727
Bsp143I	GATC	4 cut(s)	116, 333, 604, 649
Bsp1720I	GCTNAGC	1 cut(s)	95
BspACI	CCGC	8 cut(s)	14, 72, 85, 145, 150, 165, 170, 307
BspANI	GGCC	4 cut(s)	56, 141, 161, 727
BspCNI	CTCAG	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	118, 174
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	3 cut(s)	111, 124, 644
BsrBI	CCGCTC	3 cut(s)	72, 150, 170
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	4 cut(s)	188, 380, 532, 553
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	4 cut(s)	176, 591, 661, 754
BssMI	GATC	4 cut(s)	116, 333, 604, 649
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	2 cut(s)	178, 734
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	5 cut(s)	79, 83, 143, 163, 321
BstDEI	CTNAG	2 cut(s)	95, 784
BstDSI	CCRYGG	1 cut(s)	661
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	319, 739
BstKTI	GATC	4 cut(s)	119, 336, 607, 652
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	4 cut(s)	116, 333, 604, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 91, 147, 167, 470
BstNI	CCWGG	2 cut(s)	178, 734
BstNSI	RCATGY	2 cut(s)	32, 53
BstSCI	CCNGG	3 cut(s)	176, 289, 732
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	571, 599
BstX2I	RGATCY	2 cut(s)	116, 649
BstYI	RGATCY	2 cut(s)	116, 649
BsuRI	GGCC	4 cut(s)	56, 141, 161, 727
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	329, 648
Cac8I	GCNNGC	5 cut(s)	79, 83, 143, 163, 321
CfoI	GCGC	2 cut(s)	319, 739
Cfr10I	RCCGGY	1 cut(s)	141
CseI	GACGC	1 cut(s)	840
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	3 cut(s)	29, 50, 67
DdeI	CTNAG	2 cut(s)	95, 784
DpnI	GATC	4 cut(s)	118, 335, 606, 651
DpnII	GATC	4 cut(s)	116, 333, 604, 649
DraIII	CACNNNGTG	1 cut(s)	662
EaeI	YGGCCR	3 cut(s)	54, 139, 159
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	754
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	176, 732
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	3 cut(s)	32, 53, 70
FatI	CATG	3 cut(s)	28, 49, 66
FauI	CCCGC	1 cut(s)	314
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	585, 588
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	585, 588
FspBI	CTAG	5 cut(s)	108, 113, 209, 401, 707
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	2 cut(s)	318, 738
GluI	GCNGC	2 cut(s)	585, 588
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	4 cut(s)	56, 141, 161, 727
HapII	CCGG	2 cut(s)	142, 290
HgaI	GACGC	1 cut(s)	840
HhaI	GCGC	2 cut(s)	319, 739
Hin1II	CATG	3 cut(s)	32, 53, 70
Hin6I	GCGC	2 cut(s)	317, 737
HinP1I	GCGC	2 cut(s)	317, 737
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	6 cut(s)	5, 132, 367, 614, 759, 805
HpaII	CCGG	2 cut(s)	142, 290
HphI	GGTGA	1 cut(s)	486
Hpy166II	GTNNAC	2 cut(s)	352, 371
Hpy188I	TCNGA	3 cut(s)	366, 442, 787
Hpy188III	TCNNGA	6 cut(s)	120, 538, 693, 802, 809, 817
Hpy8I	GTNNAC	2 cut(s)	352, 371
HpyAV	CCTTC	2 cut(s)	782, 790
HpyCH4IV	ACGT	3 cut(s)	155, 359, 838
HpyCH4V	TGCA	6 cut(s)	32, 44, 246, 329, 345, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 91, 147, 167, 470
HpyF3I	CTNAG	2 cut(s)	95, 784
HpySE526I	ACGT	3 cut(s)	155, 359, 838
Hsp92II	CATG	3 cut(s)	32, 53, 70
HspAI	GCGC	2 cut(s)	317, 737
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	116, 333, 604, 649
LmnI	GCTCC	5 cut(s)	74, 147, 167, 478, 638
Lsp1109I	GCAGC	2 cut(s)	571, 599
LweI	GCATC	3 cut(s)	233, 460, 684
MaeI	CTAG	5 cut(s)	108, 113, 209, 401, 707
MaeII	ACGT	3 cut(s)	155, 359, 838
MaeIII	GTNAC	4 cut(s)	190, 382, 523, 643
MalI	GATC	4 cut(s)	118, 335, 606, 651
MbiI	CCGCTC	3 cut(s)	72, 150, 170
MboI	GATC	4 cut(s)	116, 333, 604, 649
MboII	GAAGA	3 cut(s)	467, 722, 835
MflI	RGATCY	2 cut(s)	116, 649
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	5 cut(s)	19, 312, 531, 625, 684
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	376
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	204, 396, 479, 629
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	85, 165, 259
MspI	CCGG	2 cut(s)	142, 290
MspR9I	CCNGG	3 cut(s)	178, 291, 734
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	178, 734
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	5 cut(s)	78, 91, 147, 167, 470
NaeI	GCCGGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	116, 333, 604, 649
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	32, 53, 70
NlaIV	GGNNCC	2 cut(s)	118, 174
NmeAIII	GCCGAG	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	643
NsbI	TGCGCA	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	2 cut(s)	32, 53
PcsI	WCGNNNNNNNCGW	1 cut(s)	807
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	5 cut(s)	5, 132, 614, 759, 805
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	586, 589
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	176, 732
PspGI	CCWGG	2 cut(s)	176, 732
PspN4I	GGNNCC	2 cut(s)	118, 174
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	2 cut(s)	116, 649
PvuII	CAGCTG	1 cut(s)	259
SaqAI	TTAA	4 cut(s)	204, 396, 479, 629
SatI	GCNGC	2 cut(s)	585, 588
Sau3AI	GATC	4 cut(s)	116, 333, 604, 649
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	3 cut(s)	178, 291, 734
SfaNI	GCATC	3 cut(s)	233, 460, 684
SfcI	CTRYAG	1 cut(s)	585
Sse9I	AATT	5 cut(s)	19, 312, 531, 625, 684
SsiI	CCGC	8 cut(s)	14, 72, 85, 145, 150, 165, 170, 307
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	5 cut(s)	108, 113, 209, 401, 707
StyD4I	CCNGG	3 cut(s)	176, 289, 732
StyI	CCWWGG	1 cut(s)	754
TaiI	ACGT	3 cut(s)	158, 362, 841
TaqI	TCGA	1 cut(s)	801
TasI	AATT	5 cut(s)	19, 312, 531, 625, 684
TfiI	GAWTC	5 cut(s)	5, 132, 614, 759, 805
Tru1I	TTAA	4 cut(s)	204, 396, 479, 629
Tru9I	TTAA	4 cut(s)	204, 396, 479, 629
TscAI	CASTG	2 cut(s)	336, 648
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	584, 587
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	2 cut(s)	282, 836
TspGWI	ACGGA	3 cut(s)	465, 467, 650
TspRI	CASTG	2 cut(s)	336, 648
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	2 cut(s)	531, 625
XceI	RCATGY	2 cut(s)	32, 53
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	5 cut(s)	108, 113, 209, 401, 707
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.