Rh3AG184500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000552
Physical Location & Seq
Forward (+)
17612175 .. 17655379
43205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG184500.1

Sequence Viewer

Length: 183 bp
ATGGGGTCTGGCAAAGAGATGAGAACGTTGTTGGAAAGAGTCATTGCTGGGAAGGTGGAGTCTAGGTTGTGCTCTCAGTGGAGGGTTACCCCCGCTCCCAATGAGTTCGATTCATTGGCTCATAAAAGGTTGATGCAAGTCAGTTGGTACGCTAGATTGAAGAGTTGGGTGATTGCGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.92

Weight (kDa)

10.17

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 1 cut(s) 93
AclI AACGTT 1 cut(s) 26
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 74
BfaI CTAG 2 cut(s) 63, 153
BmsI GCATC 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 50, 79, 80, 109
Bse3DI GCAATG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 74
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 85
FaiI YATR 1 cut(s) 123
FauI CCCGC 1 cut(s) 100
FspBI CTAG 2 cut(s) 63, 153
GsaI CCCAGC 1 cut(s) 51
HinfI GANTC 3 cut(s) 39, 59, 110
HphI GGTGA 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 26
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 1 cut(s) 33
LweI GCATC 1 cut(s) 123
MaeI CTAG 2 cut(s) 63, 153
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 85
MbiI CCGCTC 1 cut(s) 95
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 74
MlyI GAGTC 2 cut(s) 48, 68
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 1 cut(s) 75
MseI TTAA 1 cut(s) 181
PfeI GAWTC 1 cut(s) 110
PleI GAGTC 2 cut(s) 47, 67
PpsI GAGTC 2 cut(s) 47, 67
Psp1406I AACGTT 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 47
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 181
SchI GAGTC 2 cut(s) 48, 68
SduI GDGCHC 1 cut(s) 74
SetI ASST 4 cut(s) 29, 57, 68, 131
SfaNI GCATC 1 cut(s) 123
SgeI CNNG 6 cut(s) 21, 60, 75, 104, 149, 165
SsiI CCGC 1 cut(s) 93
SspMI CTAG 2 cut(s) 63, 153
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 108
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TscAI CASTG 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 83
XspI CTAG 2 cut(s) 63, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.