RLG00000030788

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
67501505 .. 67503101
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030788

Sequence Viewer

Length: 441 bp
ATGAGTTTGGGTACCAGCATTTGGGTCTTCTCCAGATTTTTAAATAGTGTTCGGTACAGAAATTGCTTAGTGCAGAAGGCAGCTTGCTTCAAAACCTTAACTTCCTCAAGTAATACAATCCTAATCGATGACTCTCGAGCCAATCAGTACGGATTTTTCCTTAACCATCTGAATTTCAGGGATTTCACCCTTCTCGAACTTCTGGCGAAGTTCAGGAGATGGTTGTATTTGGCTGTAGTTGAAGTCCTCTTGCCACAGAAGCTTAAAAAAGAACCTACAGATGACGAAAAGAGGAGGATGAAAATAGAGGCCAGAAGCTTGATGAAAATAGTGATCAGACCTGGTGGAGGTGATTCAACACCTTCAGATGGTGATCAGGTCATATATCATTGCACCATTAGAACATTGGATCGAGATATTGTTGAATCTTCAAGATCATAA

Protein Analysis

147

Amino Acids

16.89

Weight (kDa)

9.58

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 11
AccB7I CCANNNNNTGG 1 cut(s) 21
AclWI GGATC 1 cut(s) 417
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 3 cut(s) 13, 56, 149
AfiI CCNNNNNNNGG 3 cut(s) 21, 347, 368
AgsI TTSAA 5 cut(s) 91, 242, 357, 425, 432
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 3 cut(s) 83, 262, 318
AluI AGCT 3 cut(s) 83, 262, 318
AlwI GGATC 1 cut(s) 417
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 172
Asp718I GGTACC 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 178, 362, 383
AvaI CYCGRG 1 cut(s) 135
BanI GGYRCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 174, 213, 362
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 2 cut(s) 333, 373
BfmI CTRYAG 2 cut(s) 234, 276
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 347, 368
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 1 cut(s) 342
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 21, 347, 368
BseMI GCAATG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 135
BslI CCNNNNNNNGG 3 cut(s) 21, 347, 368
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 4 cut(s) 333, 373, 409, 434
BspANI GGCC 1 cut(s) 311
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 388
BssMI GATC 4 cut(s) 333, 373, 409, 434
Bst2UI CCWGG 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 4 cut(s) 336, 376, 412, 437
BstMBI GATC 4 cut(s) 333, 373, 409, 434
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 2 cut(s) 234, 276
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 311
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 126
CsiI ACCWGGT 1 cut(s) 340
Csp6I GTAC 3 cut(s) 12, 55, 148
CviJI RGCY 6 cut(s) 83, 140, 233, 262, 311, 318
CviKI_1 RGCY 6 cut(s) 83, 140, 233, 262, 311, 318
CviQI GTAC 3 cut(s) 12, 55, 148
DdeI CTNAG 1 cut(s) 67
DpnI GATC 4 cut(s) 335, 375, 411, 436
DpnII GATC 4 cut(s) 333, 373, 409, 434
DraI TTTAAA 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 135
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 340
FaiI YATR 3 cut(s) 383, 385, 439
FbaI TGATCA 2 cut(s) 333, 373
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 311
HindIII AAGCTT 2 cut(s) 260, 316
HinfI GANTC 3 cut(s) 131, 353, 425
HphI GGTGA 3 cut(s) 178, 362, 383
Hpy188I TCNGA 3 cut(s) 171, 338, 367
Hpy188III TCNNGA 6 cut(s) 33, 135, 194, 214, 413, 432
HpyAV CCTTC 3 cut(s) 70, 200, 372
HpyCH4V TGCA 2 cut(s) 73, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 67
KpnI GGTACC 1 cut(s) 15
Ksp22I TGATCA 2 cut(s) 333, 373
Kzo9I GATC 4 cut(s) 333, 373, 409, 434
LpnPI CCDG 9 cut(s) 28, 46, 163, 188, 199, 325, 327, 354, 362
Lsp1109I GCAGC 1 cut(s) 92
MabI ACCWGGT 1 cut(s) 340
MalI GATC 4 cut(s) 335, 375, 411, 436
MboI GATC 4 cut(s) 333, 373, 409, 434
MboII GAAGA 2 cut(s) 19, 420
MluCI AATT 2 cut(s) 61, 172
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 115, 257, 285, 288, 301, 341
MseI TTAA 4 cut(s) 41, 98, 162, 264
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 4 cut(s) 333, 373, 409, 434
NlaIV GGNNCC 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 135
PfeI GAWTC 2 cut(s) 353, 425
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 13
RsaI GTAC 3 cut(s) 13, 56, 149
RsaNI GTAC 3 cut(s) 12, 55, 148
SaqAI TTAA 4 cut(s) 41, 98, 162, 264
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 4 cut(s) 333, 373, 409, 434
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 342
SetI ASST 9 cut(s) 85, 98, 264, 277, 320, 343, 352, 364, 381
SexAI ACCWGGT 1 cut(s) 340
SfcI CTRYAG 2 cut(s) 234, 276
Sfr274I CTCGAG 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 106, 135
SmoI CTYRAG 2 cut(s) 106, 135
Sse9I AATT 2 cut(s) 61, 172
StyD4I CCNGG 1 cut(s) 340
TaqI TCGA 4 cut(s) 126, 136, 195, 412
TasI AATT 2 cut(s) 61, 172
TfiI GAWTC 2 cut(s) 353, 425
Tru1I TTAA 4 cut(s) 41, 98, 162, 264
Tru9I TTAA 4 cut(s) 41, 98, 162, 264
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 314, 338
TspGWI ACGGA 1 cut(s) 165
Van91I CCANNNNNTGG 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.