Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

39803795 .. 39806618

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAATTCTGCCAGTGAGAGCAAAGCGGCAATAGAGGATGCCATACATGGTGCATACATGGTCTTCATAGCAGCTGGAATGGCTGGAGGAACAGGCACAGGTGGGGCTCCTGTAGTTGCAAAAATGGCAAAGTCTCTGGGTATCTTGACTATTAGCATTGTCACGACACCATTCACCTTTGAGGAAGAAGGCTTGACACCAGTAAATGAGGCGTTTAATTTAGCTGATGATGTTCTTCAGCAGGGTGTCCGTTGTATCTCTGAGTTTCCAGGTCTTGTCAATGTTGATTTTGCTGATGTAAGAGCTATCATGAAAGATGCTGGTTCCCTCGCTTATGGGAATAGATATTATTTGAAACTTTTACAGATGAATGCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

126

Amino Acids

13.22

Weight (kDa)

4.64

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	4 - 74	1.3e-16	Tubulin/FtsZ family, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	74, 224, 305
AluI	AGCT	3 cut(s)	74, 224, 305
Alw26I	GTCTC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	27, 72
BlsI	GCNGC	2 cut(s)	28, 73
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	108, 325
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	28, 307
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	12, 200
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	12, 200
BseXI	GCAGC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	108, 325
BsrI	ACTGG	2 cut(s)	12, 200
Bst2UI	CCWGG	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 125
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	309
CviAII	CATG	3 cut(s)	47, 58, 310
CviJI	RGCY	6 cut(s)	74, 83, 107, 192, 224, 305
CviKI_1	RGCY	6 cut(s)	74, 83, 107, 192, 224, 305
DdeI	CTNAG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	3 cut(s)	50, 61, 313
FaiI	YATR	7 cut(s)	44, 48, 55, 59, 68, 311, 336
FatI	CATG	3 cut(s)	46, 57, 309
Fnu4HI	GCNGC	2 cut(s)	27, 72
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	27, 72
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	2 cut(s)	27, 72
GsuI	CTGGAG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	50, 61, 313
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	3 cut(s)	145, 163, 310
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	53, 119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 125
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	50, 61, 313
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	28, 307
MaeI	CTAG	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	55, 197, 227
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	4, 217
MnlI	CCTC	5 cut(s)	28, 80, 175, 202, 338
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	80, 125
NlaIII	CATG	3 cut(s)	50, 61, 313
NlaIV	GGNNCC	2 cut(s)	108, 325
NmuCI	GTSAC	1 cut(s)	160
PagI	TCATGA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	28, 73
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	108, 325
PvuII	CAGCTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	27, 72
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	6 cut(s)	76, 103, 179, 226, 274, 307
SfaNI	GCATC	2 cut(s)	28, 307
SfcI	CTRYAG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	4, 217
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	268
TasI	AATT	2 cut(s)	4, 217
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	17, 55, 326
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.