Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30717319 .. 30719524

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGACGTATGCATCCACGCATTTTACTTTTTCTGATACTCGAAACCCAGTTGGGGTTCTAACAAGACTGGGAGGGAGAGTATTAGTGGAGAATCACTTGGAAAGAGTTAGAAGTGTGAAAATGCTGCCCGAGAGCAAGTTTGGATTTTTGGGTGCGATCCATAAGTCGACTTTGCCTCAATTTAAGTGCTCGGCCAGCTCTCACAGTGTCGGTTCATATCCGAATAAAGACCCTTTTCTGAATCTACACCCTGAGGTTTCTATGCTTAGAGGTGAGGGCAATAATACGTCGAGCAATCTGAGGAAAGATAATCCAGGTGGGAATGTGACTGAGAGCTTGAGTGAAAAATCTCTTCCGAATAATTACAACGAAGCAAAGATTAAGGTTATTGGTGTTGGTGGTGGAGGGTCAAATGCAGTCAATCGTATGATTGAGAGTGCAATGAAGGGTGTGGAGTTCTGGATTGTTAACACTGATGTTCAAGCCATGAGAATGTCACCTGTGTTTCCTGAGAACCGTTTACAAATCGGTCAAGAGCTTACCCGGGGTCTTGGTGCTGGTGGAAACCCGGATGTTGGTATGAATGCTGCCAAAGAAAGCAGAGAATCGATAGAAGAAGCACTATATGGGTCAGACATGGTTTTCGTTACGGCTGGAATGGGTGGAGGAACTGGCACTGGCGGAGCTCCTGTTGTTGCAGGTGTTGCAAAATCAATGGGTATATTGACGGTTGGCGTTGTGACAACCCCTTTCTCTTTTGAGGGACGAAAAAGGGCAGTTCAAGCCCAGGAAGGGATTGCAGCTTTGAGAGAGAATGTTGACACACTGATAGTCATTCCAAATGACAAGTTATTGACTGCAGTTTCCCAGTCTACCCCAGTAACAGAGGCGTTTAATCTAGCTGATGATATTCTACGACAAGGTGTTCGTGGTATCTCTGATATAATCACGATTCCTGGGCTGGTAAATGTCGACTTTGCTGATGTAAGGGCTATAATGGCGAATGCAGGTTCTTCATTGATGGGGATAGGAACTGCAACTGGTAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

351

Amino Acids

37.0

Weight (kDa)

6.55

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	127 - 288	1.4e-47	Tubulin/FtsZ family, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
Acc36I	ACCTGC	2 cut(s)	692, 1001
AccI	GTMKAC	3 cut(s)	170, 875, 975
AciI	CCGC	1 cut(s)	684
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	55, 578, 795
AgsI	TTSAA	2 cut(s)	485, 785
AjnI	CCWGG	3 cut(s)	316, 789, 958
AluBI	AGCT	6 cut(s)	201, 339, 541, 689, 806, 905
AluI	AGCT	6 cut(s)	201, 339, 541, 689, 806, 905
Alw21I	GWGCWC	2 cut(s)	194, 691
AlwI	GGATC	1 cut(s)	154
Ama87I	CYCGRG	2 cut(s)	131, 546
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	3 cut(s)	127, 590, 803
ArsI	GACNNNNNNTTYG	4 cut(s)	629, 661, 912, 944
AsuC2I	CCSGG	3 cut(s)	547, 548, 572
AsuHPI	GGTGA	2 cut(s)	287, 492
AvaI	CYCGRG	2 cut(s)	131, 546
AxyI	CCTNAGG	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	691
Bbv12I	GWGCWC	2 cut(s)	194, 691
BbvI	GCAGC	3 cut(s)	114, 577, 815
BccI	CCATC	1 cut(s)	1018
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	3 cut(s)	318, 791, 960
BcnI	CCSGG	3 cut(s)	547, 548, 572
BfaI	CTAG	1 cut(s)	902
BfmI	CTRYAG	1 cut(s)	861
BfuAI	ACCTGC	2 cut(s)	692, 1001
BisI	GCNGC	3 cut(s)	128, 591, 804
BlsI	GCNGC	3 cut(s)	129, 592, 805
Bme1390I	CCNGG	6 cut(s)	318, 547, 548, 572, 791, 960
BmeT110I	CYCGRG	2 cut(s)	131, 546
BmrFI	CCNGG	6 cut(s)	318, 547, 548, 572, 791, 960
BmrI	ACTGGG	4 cut(s)	44, 80, 865, 875
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	4 cut(s)	44, 80, 865, 875
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	3 cut(s)	547, 548, 572
Bsa29I	ATCGAT	1 cut(s)	611
BsaJI	CCNNGG	4 cut(s)	546, 547, 789, 959
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 678, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 578, 795
Bse1I	ACTGG	7 cut(s)	50, 75, 679, 685, 871, 881, 1048
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	318, 791, 960
BseCI	ATCGAT	1 cut(s)	611
BseDI	CCNNGG	4 cut(s)	546, 547, 789, 959
BseGI	GGATG	2 cut(s)	14, 580
BseLI	CCNNNNNNNGG	3 cut(s)	55, 578, 795
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	4 cut(s)	246, 293, 324, 504
BseNI	ACTGG	7 cut(s)	50, 75, 679, 685, 871, 881, 1048
BseXI	GCAGC	3 cut(s)	114, 577, 815
BshFI	GGCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	194, 691
BsiHKCI	CYCGRG	2 cut(s)	131, 546
BsiSI	CCGG	2 cut(s)	547, 572
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	3 cut(s)	55, 578, 795
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	2 cut(s)	592, 1012
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	131, 546
Bsp1286I	GDGCHC	2 cut(s)	194, 691
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	684
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	4 cut(s)	247, 294, 325, 505
BspDI	ATCGAT	1 cut(s)	611
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	2 cut(s)	692, 1001
BspPI	GGATC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	7 cut(s)	50, 75, 679, 685, 871, 881, 1048
BssECI	CCNNGG	4 cut(s)	546, 547, 789, 959
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	318, 791, 960
Bst4CI	ACNGT	3 cut(s)	209, 521, 733
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	5 cut(s)	255, 269, 302, 333, 513
BstF5I	GGATG	2 cut(s)	14, 580
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 198, 707, 785, 1001
BstNI	CCWGG	3 cut(s)	318, 791, 960
BstSCI	CCNGG	6 cut(s)	316, 545, 546, 570, 789, 958
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	114, 577, 815
Bsu15I	ATCGAT	1 cut(s)	611
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	197
BsuTUI	ATCGAT	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	14, 580
BtsIMutI	CAGTG	4 cut(s)	214, 474, 678, 827
BveI	ACCTGC	2 cut(s)	692, 1001
Cac8I	GCNNGC	1 cut(s)	199
Cfr9I	CCCGGG	1 cut(s)	546
ClaI	ATCGAT	1 cut(s)	611
CviAII	CATG	2 cut(s)	490, 640
DdeI	CTNAG	5 cut(s)	255, 269, 302, 333, 513
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	699
Ecl136II	GAGCTC	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	691
Eco53kI	GAGCTC	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	131, 546
EcoICRI	GAGCTC	1 cut(s)	689
EcoRII	CCWGG	3 cut(s)	316, 789, 958
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	691
FaeI	CATG	2 cut(s)	493, 643
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	2 cut(s)	489, 639
FblI	GTMKAC	3 cut(s)	170, 875, 975
Fnu4HI	GCNGC	3 cut(s)	128, 591, 804
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	3 cut(s)	128, 591, 804
FspBI	CTAG	1 cut(s)	902
GluI	GCNGC	3 cut(s)	128, 591, 804
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	547, 572
Hin1II	CATG	2 cut(s)	493, 643
HincII	GTYRAC	4 cut(s)	171, 472, 823, 976
HindII	GTYRAC	4 cut(s)	171, 472, 823, 976
HinfI	GANTC	4 cut(s)	94, 244, 608, 955
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	2 cut(s)	547, 572
HphI	GGTGA	2 cut(s)	287, 492
Hpy166II	GTNNAC	6 cut(s)	171, 472, 524, 823, 876, 976
Hpy188I	TCNGA	7 cut(s)	37, 225, 243, 303, 360, 637, 943
Hpy188III	TCNNGA	4 cut(s)	463, 512, 536, 952
Hpy8I	GTNNAC	6 cut(s)	171, 472, 524, 823, 876, 976
Hpy99I	CGWCG	2 cut(s)	10, 295
HpyAV	CCTTC	2 cut(s)	442, 788
HpyCH4III	ACNGT	3 cut(s)	209, 521, 733
HpyCH4IV	ACGT	2 cut(s)	8, 290
HpyCH4V	TGCA	9 cut(s)	14, 419, 443, 701, 710, 803, 863, 1010, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 198, 707, 785, 1001
HpyF3I	CTNAG	5 cut(s)	255, 269, 302, 333, 513
HpySE526I	ACGT	2 cut(s)	8, 290
Hsp92II	CATG	2 cut(s)	493, 643
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	686, 694
Lsp1109I	GCAGC	3 cut(s)	114, 577, 815
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	902
MaeII	ACGT	2 cut(s)	8, 290
MaeIII	GTNAC	5 cut(s)	328, 498, 649, 742, 883
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	347, 629, 1008
MhlI	GDGCHC	2 cut(s)	194, 691
MluCI	AATT	3 cut(s)	182, 364, 1048
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	4 cut(s)	186, 384, 471, 897
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	2 cut(s)	547, 572
MspR9I	CCNGG	6 cut(s)	318, 547, 548, 572, 791, 960
Mva1269I	GAATGC	2 cut(s)	592, 1012
MvaI	CCWGG	3 cut(s)	318, 791, 960
MwoI	GCNNNNNNNGC	5 cut(s)	11, 198, 707, 785, 1001
NciI	CCSGG	3 cut(s)	547, 548, 572
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	493, 643
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	3 cut(s)	328, 498, 742
NsiI	ATGCAT	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	692
PctI	GAATGC	2 cut(s)	592, 1012
PfeI	GAWTC	4 cut(s)	94, 244, 608, 955
PkrI	GCNGC	3 cut(s)	129, 592, 805
Psp124BI	GAGCTC	1 cut(s)	691
Psp6I	CCWGG	3 cut(s)	316, 789, 958
PspGI	CCWGG	3 cut(s)	316, 789, 958
PstI	CTGCAG	1 cut(s)	865
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	691
SalI	GTCGAC	2 cut(s)	169, 974
SaqAI	TTAA	4 cut(s)	186, 384, 471, 897
SatI	GCNGC	3 cut(s)	128, 591, 804
Sau3AI	GATC	1 cut(s)	159
ScrFI	CCNGG	6 cut(s)	318, 547, 548, 572, 791, 960
SduI	GDGCHC	2 cut(s)	194, 691
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	861
SmaI	CCCGGG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	182, 364, 1048
SsiI	CCGC	1 cut(s)	684
SspMI	CTAG	1 cut(s)	902
SstI	GAGCTC	1 cut(s)	691
StyD4I	CCNGG	6 cut(s)	316, 545, 546, 570, 789, 958
TaaI	ACNGT	3 cut(s)	209, 521, 733
TaiI	ACGT	2 cut(s)	11, 293
TaqI	TCGA	5 cut(s)	43, 170, 293, 611, 975
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	3 cut(s)	182, 364, 1048
TfiI	GAWTC	4 cut(s)	94, 244, 608, 955
Tru1I	TTAA	4 cut(s)	186, 384, 471, 897
Tru9I	TTAA	4 cut(s)	186, 384, 471, 897
TscAI	CASTG	4 cut(s)	214, 481, 685, 834
TseFI	GTSAC	3 cut(s)	328, 498, 742
TseI	GCWGC	3 cut(s)	127, 590, 803
Tsp45I	GTSAC	3 cut(s)	328, 498, 742
TspDTI	ATGAA	4 cut(s)	207, 461, 599, 1008
TspMI	CCCGGG	1 cut(s)	546
TspRI	CASTG	4 cut(s)	214, 481, 685, 834
XmaI	CCCGGG	1 cut(s)	546
XmiI	GTMKAC	3 cut(s)	170, 875, 975
XspI	CTAG	1 cut(s)	902
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.