Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19017165 .. 19020095

Gene Structure 2931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTGTCTGAGAGAAAGGAAAGAGAAAAGCAAGCATGCGGCAGAAAAGAACAAAAGAAAGCAAGTTTCATGGCAGAAAAGAAGGTAAATGCTGCAGCAGAGGTTATATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGTAGATATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTGTCAGAAGGTAGTTCAGTCAAGATTCCCGATTTCTTGAAGAAGAAAAGGATGCTCACGTTATCCAGTTTGAAATGCTTCCTTTTTTATTCCAATGAGTGCCTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

132

Amino Acids

14.64

Weight (kDa)

9.22

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	27 - 70	3.6e-08	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	116, 152
AcsI	RAATTY	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	208, 328, 361
AjnI	CCWGG	1 cut(s)	240
AlwI	GGATC	2 cut(s)	116, 152
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	92, 95
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	2 cut(s)	280, 365
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	79, 107
BccI	CCATC	2 cut(s)	169, 221
BciT130I	CCWGG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	3 cut(s)	40, 93, 96
BlsI	GCNGC	3 cut(s)	41, 94, 97
Bme1390I	CCNGG	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	192, 330
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	205, 354
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	2 cut(s)	205, 354
BseXI	GCAGC	2 cut(s)	79, 107
BshFI	GGCC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	112, 121, 157
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	116, 152
BsrI	ACTGG	2 cut(s)	205, 354
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	112, 121, 157
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	33, 37
BstDEI	CTNAG	2 cut(s)	9, 167
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	115, 124, 160
BstMBI	GATC	3 cut(s)	112, 121, 157
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	79, 107
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 175
Cac8I	GCNNGC	2 cut(s)	33, 37
CviAII	CATG	2 cut(s)	36, 70
CviJI	RGCY	1 cut(s)	235
CviKI_1	RGCY	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	9, 167
DpnI	GATC	3 cut(s)	114, 123, 159
DpnII	GATC	3 cut(s)	112, 121, 157
DraIII	CACNNNGTG	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	39, 73
FaiI	YATR	5 cut(s)	37, 71, 107, 109, 111
FatI	CATG	2 cut(s)	35, 69
Fnu4HI	GCNGC	3 cut(s)	40, 93, 96
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	3 cut(s)	40, 93, 96
GluI	GCNGC	3 cut(s)	40, 93, 96
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	39, 73
HinfI	GANTC	3 cut(s)	204, 267, 313
Hpy188I	TCNGA	3 cut(s)	10, 295, 398
Hpy188III	TCNNGA	3 cut(s)	310, 317, 325
HpyAV	CCTTC	3 cut(s)	76, 290, 291
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	9, 167
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	39, 73
Kzo9I	GATC	3 cut(s)	112, 121, 157
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	4 cut(s)	186, 227, 254, 367
Lsp1109I	GCAGC	2 cut(s)	79, 107
LweI	GCATC	2 cut(s)	192, 330
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	114, 123, 159
MboI	GATC	3 cut(s)	112, 121, 157
MboII	GAAGA	4 cut(s)	230, 288, 340, 343
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	133, 192
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	94, 225, 295
MroXI	GAANNNNTTC	2 cut(s)	280, 365
MseI	TTAA	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	112, 121, 157
NlaIII	CATG	2 cut(s)	39, 73
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	280, 365
PfeI	GAWTC	3 cut(s)	204, 267, 313
PkrI	GCNGC	3 cut(s)	41, 94, 97
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	40, 93, 96
Sau3AI	GATC	3 cut(s)	112, 121, 157
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	5 cut(s)	87, 105, 283, 301, 350
SfaNI	GCATC	2 cut(s)	192, 330
SfcI	CTRYAG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	2 cut(s)	133, 192
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	133, 192
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	204, 267, 313
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	156, 175
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	92, 95
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	156, 175
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	280, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.