Rroxscaffold_2G00102410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000552
Physical Location & Seq
Forward (+)
24553815 .. 24554791
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102410.1

Sequence Viewer

Length: 459 bp
ATGGTCAACGAAGTATCATCCCCGCTTGGTGGCTACGCTAGCTATCGCGAAGAAGGGGAGGACTTCTTCGGTCCTGTCGGCGCCCAGCGCAATCTCAACACATCAATTTACAGTAGGATAACTGCCAACTGTAACAGCAAAGAGGTGCATCGATCCCAAAGTTTTTATGGGTATGATGGCCTTCGTTTGGGGCTTCCAATTTCCAAGTTGGTTGCATGCGTAATCCAAGCCACCAAACTTATTCACCTCCACCTCAAGATCATTTACCTTCTCCATTCTCGCGTCCCTGCTAAGTTATTGACTGCTCAACTAGCACAGCTTGAGTCAAAGTCAACTATGCCTATTTCGAAGGCTTCTGCGTCTACTCCTGTGGCATCTCTTGTGCCCTTGGCTCTTATAAAAAATAAGAAGAGGGCACCATCATTGGCTCTGGTCCCTACACAAAGCTTACGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.52

Weight (kDa)

9.91

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AccB1I GGYRCC 2 cut(s) 80, 415
AccI GTMKAC 1 cut(s) 362
AccII CGCG 2 cut(s) 48, 282
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 29, 187
AluBI AGCT 4 cut(s) 42, 319, 447, 456
AluI AGCT 4 cut(s) 42, 319, 447, 456
AlwI GGATC 1 cut(s) 147
AoxI GGCC 1 cut(s) 178
AspLEI GCGC 2 cut(s) 83, 90
AspS9I GGNCC 2 cut(s) 71, 433
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 347
AsuNHI GCTAGC 1 cut(s) 38
AvaII GGWCC 2 cut(s) 71, 433
BaeGI GKGCMC 2 cut(s) 387, 418
BanI GGYRCC 2 cut(s) 80, 415
BccI CCATC 2 cut(s) 170, 427
BfaI CTAG 3 cut(s) 39, 311, 457
BfoI RGCGCY 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 71, 433
BmgT120I GGNCC 2 cut(s) 71, 433
BmiI GGNNCC 3 cut(s) 82, 417, 435
BmsI GCATC 2 cut(s) 157, 383
BmtI GCTAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 347
BpuEI CTTGAG 2 cut(s) 239, 341
Bsa29I ATCGAT 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 187
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 29, 187
BseSI GKGCMC 2 cut(s) 387, 418
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 2 cut(s) 48, 282
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 2 cut(s) 80, 415
BshVI ATCGAT 1 cut(s) 151
BslFI GGGAC 2 cut(s) 269, 419
BslI CCNNNNNNNGG 2 cut(s) 29, 187
BsmFI GGGAC 2 cut(s) 269, 419
BsnI GGCC 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 387, 418
Bsp143I GATC 2 cut(s) 152, 258
Bsp68I TCGCGA 1 cut(s) 48
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 180
BspDI ATCGAT 1 cut(s) 151
BspFNI CGCG 2 cut(s) 48, 282
BspLI GGNNCC 3 cut(s) 82, 417, 435
BspOI GCTAGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 347
BspT107I GGYRCC 2 cut(s) 80, 415
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 2 cut(s) 152, 258
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 113, 131
Bst6I CTCTTC 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 40, 217
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 2 cut(s) 48, 282
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 83, 90
BstKTI GATC 2 cut(s) 155, 261
BstMBI GATC 2 cut(s) 152, 258
BstMWI GCNNNNNNNGC 4 cut(s) 39, 87, 311, 453
BstNSI RCATGY 1 cut(s) 219
BstSLI GKGCMC 2 cut(s) 387, 418
BstUI CGCG 2 cut(s) 48, 282
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 151
BtsCI GGATG 1 cut(s) 17
BtuMI TCGCGA 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 40, 217
CfoI GCGC 2 cut(s) 83, 90
Cfr13I GGNCC 2 cut(s) 71, 433
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 2 cut(s) 271, 348
CviAII CATG 1 cut(s) 216
DdeI CTNAG 1 cut(s) 291
DinI GGCGCC 1 cut(s) 82
DpnI GATC 2 cut(s) 154, 260
DpnII GATC 2 cut(s) 152, 258
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 71, 433
EcoT14I CCWWGG 1 cut(s) 387
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 1 cut(s) 219
FaiI YATR 5 cut(s) 168, 174, 217, 338, 398
FaqI GGGAC 2 cut(s) 269, 419
FatI CATG 1 cut(s) 215
FauI CCCGC 1 cut(s) 30
FblI GTMKAC 1 cut(s) 362
FokI GGATG 1 cut(s) 4
FspBI CTAG 3 cut(s) 39, 311, 457
GlaI GCGC 2 cut(s) 82, 89
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 180
HgaI GACGC 2 cut(s) 271, 348
HhaI GCGC 2 cut(s) 83, 90
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 2 cut(s) 81, 88
HinP1I GCGC 2 cut(s) 81, 88
HincII GTYRAC 2 cut(s) 7, 333
HindII GTYRAC 2 cut(s) 7, 333
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 1 cut(s) 323
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 7, 333, 363
Hpy188III TCNNGA 2 cut(s) 47, 256
Hpy8I GTNNAC 3 cut(s) 7, 333, 363
HpyAV CCTTC 4 cut(s) 47, 191, 278, 343
HpyCH4III ACNGT 2 cut(s) 113, 131
HpyCH4V TGCA 2 cut(s) 148, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 87, 311, 453
HpyF3I CTNAG 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 2 cut(s) 81, 88
KasI GGCGCC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 152, 258
LpnPI CCDG 5 cut(s) 87, 98, 300, 381, 416
LweI GCATC 2 cut(s) 157, 383
MaeI CTAG 3 cut(s) 39, 311, 457
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 154, 260
MboI GATC 2 cut(s) 152, 258
MboII GAAGA 3 cut(s) 58, 62, 421
MhlI GDGCHC 2 cut(s) 387, 418
MluCI AATT 2 cut(s) 105, 198
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 5 cut(s) 52, 136, 257, 263, 405
MvnI CGCG 2 cut(s) 48, 282
MwoI GCNNNNNNNGC 4 cut(s) 39, 87, 311, 453
NarI GGCGCC 1 cut(s) 81
NdeII GATC 2 cut(s) 152, 258
NheI GCTAGC 1 cut(s) 38
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 3 cut(s) 82, 417, 435
NruI TCGCGA 1 cut(s) 48
NspI RCATGY 1 cut(s) 219
NspV TTCGAA 1 cut(s) 347
PaeI GCATGC 1 cut(s) 219
PleI GAGTC 1 cut(s) 331
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 331
PsiI TTATAA 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 82, 417, 435
PspPI GGNCC 2 cut(s) 71, 433
RruI TCGCGA 1 cut(s) 48
Sau3AI GATC 2 cut(s) 152, 258
Sau96I GGNCC 2 cut(s) 71, 433
SchI GAGTC 1 cut(s) 332
SduI GDGCHC 2 cut(s) 387, 418
SetI ASST 8 cut(s) 44, 147, 249, 255, 270, 321, 449, 458
SfaNI GCATC 2 cut(s) 157, 383
SfoI GGCGCC 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 347
SinI GGWCC 2 cut(s) 71, 433
SmlI CTYRAG 2 cut(s) 254, 320
SmoI CTYRAG 2 cut(s) 254, 320
SphI GCATGC 1 cut(s) 219
Sse9I AATT 2 cut(s) 105, 198
SsiI CCGC 1 cut(s) 23
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 3 cut(s) 39, 311, 457
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 113, 131
TaqI TCGA 2 cut(s) 151, 347
TaqII GACCGA 1 cut(s) 59
TasI AATT 2 cut(s) 105, 198
VpaK11BI GGWCC 2 cut(s) 71, 433
XceI RCATGY 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 39, 311, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.