Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19151149 .. 19180072

Gene Structure 28924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACGAAAAGACGTAGAAGGATGAAAATAGTGGCCGGAAGCTTGATGAAAGTAGTGATCAGACCTGGTGGAGAGTGCTGTGCGTTTAGTAATGGGGAATATATAAAAGCTGGTTTGATTGAACTGGAGCATTGGAGCTATAAAGCAACAGATGAGTATGCAGGTTCAGCTTGGGATGAACTCAAGCATACTTGGCAAGCCATTGGATTCCTGGGTAAAATCTACGTGATTGCTGCCAAGAAGTCTTCAGCGAAGGTGGTGAGTACGAATAGAACAAAATTCAGCGGCTTCAACGCATTCTTGAAAAGGTTGATGCAAGTCAGTTGGTACGCTAGATTGAAGAGTTGGGTGATTGCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

120

Amino Acids

13.64

Weight (kDa)

10.1

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIL	PF01843	24 - 71	8.5e-06	DIL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	265, 329
AgsI	TTSAA	4 cut(s)	122, 292, 304, 340
AjnI	CCWGG	2 cut(s)	64, 210
AluBI	AGCT	4 cut(s)	42, 110, 138, 170
AluI	AGCT	4 cut(s)	42, 110, 138, 170
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	271, 361
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	66, 212
BclI	TGATCA	1 cut(s)	57
BfaI	CTAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	234, 286
BlsI	GCNGC	2 cut(s)	235, 287
Bme1390I	CCNGG	2 cut(s)	66, 212
BmrFI	CCNGG	2 cut(s)	66, 212
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	66, 212
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	27, 181
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	66, 212
Bst6I	CTCTTC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	27, 181
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 193
BstNI	CCWGG	2 cut(s)	66, 212
BstSCI	CCNGG	2 cut(s)	64, 210
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	27, 181
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	198
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	264, 328
CviJI	RGCY	7 cut(s)	35, 42, 110, 138, 170, 200, 288
CviKI_1	RGCY	7 cut(s)	35, 42, 110, 138, 170, 200, 288
CviQI	GTAC	2 cut(s)	264, 328
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	64, 210
FaiI	YATR	5 cut(s)	102, 104, 141, 159, 189
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	234, 286
FokI	GGATG	2 cut(s)	34, 188
Fsp4HI	GCNGC	2 cut(s)	234, 286
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	2 cut(s)	234, 286
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	271, 361
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	12, 247
HpyCH4IV	ACGT	2 cut(s)	13, 225
HpyCH4V	TGCA	2 cut(s)	161, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 193
HpySE526I	ACGT	2 cut(s)	13, 225
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	127, 135
LpnPI	CCDG	8 cut(s)	49, 51, 78, 96, 110, 147, 197, 224
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	303
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	2 cut(s)	13, 225
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	2 cut(s)	237, 352
MluCI	AATT	1 cut(s)	278
MseI	TTAA	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	66, 212
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	66, 212
MwoI	GCNNNNNNNGC	2 cut(s)	167, 193
NdeII	GATC	1 cut(s)	57
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	235, 287
Ppu21I	YACGTR	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	64, 210
PspGI	CCWGG	2 cut(s)	64, 210
RsaI	GTAC	2 cut(s)	265, 329
RsaNI	GTAC	2 cut(s)	264, 328
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	2 cut(s)	234, 286
Sau3AI	GATC	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	66, 212
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	64, 210
TaiI	ACGT	2 cut(s)	16, 228
TasI	AATT	1 cut(s)	278
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	38, 62, 192
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.