Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30862807 .. 30866049

Gene Structure 3243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024009

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGTCTCATGGCAAGTCAATGAAGTTATTGAGTGCAGTTTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTGTTCGTGATTCACGGGCTGGTAAATGTTGACTTTGCTGATGTAAGGGCTATAATGGCGAATGCAGAGTCAGAGGCTTCACTTATGATTTTGGACATGATTGTGCTGGAACCTATTACCTTTATGGGGTTAGTGTGTGAGGAGGAAGGTGATCTAATCCCAGGGAAGACAAGGGCAAGAGATGCTGCATTTAATGCCATTCAATCACCTTTATTAGATATTGGCATAGAGAGGGCTACTGGAATTGTAAATGCTGCAGCCGAGATTATGTATGATCTTGTTGATCCAATAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAACTAAGTTTTGTTAGCATCACACTAATTGCTTCTGGATTCAAAATCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGACACATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTCTCAGAAGGCAGTTCAGTCGAGATTCCCGATTTCTTGAAGAAGAAAGGACACTCACGTTATCCAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

203

Amino Acids

21.72

Weight (kDa)

4.88

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	80 - 151	1.3e-06	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	353, 389
AcsI	RAATTY	1 cut(s)	370
AdeI	CACNNNGTG	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	278, 454, 574
AjnI	CCWGG	2 cut(s)	235, 486
AluBI	AGCT	1 cut(s)	605
AluI	AGCT	1 cut(s)	605
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	353, 389
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	3 cut(s)	260, 329, 332
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
Asp700I	GAANNNNTTC	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	236, 273
BbsI	GAAGAC	2 cut(s)	248, 529
BbvI	GCAGC	3 cut(s)	247, 316, 344
BccI	CCATC	2 cut(s)	406, 467
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BciT130I	CCWGG	2 cut(s)	237, 488
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	3 cut(s)	261, 330, 333
BlsI	GCNGC	3 cut(s)	262, 331, 334
Bme1390I	CCNGG	2 cut(s)	237, 488
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	237, 488
BmrI	ACTGGG	2 cut(s)	40, 50
BmsI	GCATC	2 cut(s)	247, 438
BmuI	ACTGGG	2 cut(s)	40, 50
BpiI	GAAGAC	2 cut(s)	248, 529
BpmI	CTGGAG	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	235, 236, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	46, 56, 319
BseBI	CCWGG	2 cut(s)	237, 488
BseDI	CCNNGG	3 cut(s)	235, 236, 508
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	418, 552
BseNI	ACTGG	3 cut(s)	46, 56, 319
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	247, 316, 344
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	226, 349, 358, 394
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	417, 551
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	2 cut(s)	353, 389
BsrI	ACTGG	3 cut(s)	46, 56, 319
BssECI	CCNNGG	3 cut(s)	235, 236, 508
BssMI	GATC	4 cut(s)	226, 349, 358, 394
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	237, 488
BstAPI	GCANNNNNTGC	2 cut(s)	257, 269
BstDEI	CTNAG	3 cut(s)	404, 416, 538
BstKTI	GATC	4 cut(s)	229, 352, 361, 397
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	226, 349, 358, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 257, 269
BstNI	CCWGG	2 cut(s)	237, 488
BstSCI	CCNGG	2 cut(s)	235, 486
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	247, 316, 344
BstV2I	GAAGAC	2 cut(s)	248, 529
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 412
CviAII	CATG	2 cut(s)	11, 172
CviJI	RGCY	7 cut(s)	94, 125, 152, 311, 335, 481, 605
CviKI_1	RGCY	7 cut(s)	94, 125, 152, 311, 335, 481, 605
DdeI	CTNAG	3 cut(s)	404, 416, 538
DpnI	GATC	4 cut(s)	228, 351, 360, 396
DpnII	GATC	4 cut(s)	226, 349, 358, 394
DraIII	CACNNNGTG	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	235, 486
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	2 cut(s)	14, 175
FaiI	YATR	8 cut(s)	12, 128, 161, 173, 200, 302, 344, 348
FatI	CATG	2 cut(s)	10, 171
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	261, 330, 333
Fsp4HI	GCNGC	3 cut(s)	261, 330, 333
GluI	GCNGC	3 cut(s)	261, 330, 333
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	481
Hin1II	CATG	2 cut(s)	14, 175
HincII	GTYRAC	2 cut(s)	106, 413
HindII	GTYRAC	2 cut(s)	106, 413
HinfI	GANTC	6 cut(s)	5, 85, 143, 450, 513, 559
HphI	GGTGA	2 cut(s)	236, 273
Hpy166II	GTNNAC	3 cut(s)	51, 106, 413
Hpy188I	TCNGA	2 cut(s)	148, 541
Hpy188III	TCNNGA	5 cut(s)	82, 447, 556, 563, 571
Hpy8I	GTNNAC	3 cut(s)	51, 106, 413
HpyAV	CCTTC	4 cut(s)	215, 536, 537, 544
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	4 cut(s)	38, 140, 263, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 257, 269
HpyF3I	CTNAG	3 cut(s)	404, 416, 538
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	2 cut(s)	14, 175
Kzo9I	GATC	4 cut(s)	226, 349, 358, 394
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	3 cut(s)	247, 316, 344
LweI	GCATC	2 cut(s)	247, 438
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	58, 388
MalI	GATC	4 cut(s)	228, 351, 360, 396
MboI	GATC	4 cut(s)	226, 349, 358, 394
MboII	GAAGA	5 cut(s)	253, 476, 534, 586, 589
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	3 cut(s)	318, 370, 438
MlyI	GAGTC	2 cut(s)	14, 152
MnlI	CCTC	7 cut(s)	58, 142, 208, 211, 300, 471, 541
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	3 cut(s)	72, 267, 374
MslI	CAYNNNNRTG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	237, 488
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	2 cut(s)	237, 488
MwoI	GCNNNNNNNGC	3 cut(s)	131, 257, 269
NdeII	GATC	4 cut(s)	226, 349, 358, 394
NlaIII	CATG	2 cut(s)	14, 175
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	388
PasI	CCCWGGG	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PctI	GAATGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	4 cut(s)	85, 450, 513, 559
PkrI	GCNGC	3 cut(s)	262, 331, 334
PleI	GAGTC	2 cut(s)	13, 151
PpsI	GAGTC	2 cut(s)	13, 151
Psp6I	CCWGG	2 cut(s)	235, 486
PspGI	CCWGG	2 cut(s)	235, 486
PspN4I	GGNNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	72, 267, 374
SatI	GCNGC	3 cut(s)	261, 330, 333
Sau3AI	GATC	4 cut(s)	226, 349, 358, 394
SchI	GAGTC	2 cut(s)	14, 152
ScrFI	CCNGG	2 cut(s)	237, 488
SetI	ASST	7 cut(s)	190, 197, 226, 286, 529, 595, 607
SfaNI	GCATC	2 cut(s)	247, 438
SfcI	CTRYAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	318, 370, 438
SspI	AATATT	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	235, 486
StyI	CCWWGG	1 cut(s)	508
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	520, 555
TasI	AATT	3 cut(s)	318, 370, 438
TfiI	GAWTC	4 cut(s)	85, 450, 513, 559
Tru1I	TTAA	3 cut(s)	72, 267, 374
Tru9I	TTAA	3 cut(s)	72, 267, 374
TscAI	CASTG	2 cut(s)	393, 412
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	260, 329, 332
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	393, 412
XapI	RAATTY	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.