Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

30700978 .. 30708900

Gene Structure 7923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGTGATTCAACACCTTCAGATGGTGATCAGGTCATATATCATTGCACTGTTAGAACATTGGATGGGGTTATTGTTGAATCTTCAAGATCAGAATTTAGTGCCTTCTATTACAGCGAGAGTGCTGTTCGTTTAGTAATGGGGAATATTCAGCTTGGGATGAACTCAAGCATACTAGCTAGGCAAGCCGTTGGATCCCTGGTTAGCATCACTCTAATTGCTTCTGGATTCAAACACCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGACATTACCCTTGGAATCAATCAAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACACTCACGTTATCCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

144

Amino Acids

15.54

Weight (kDa)

8.82

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	237, 250
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	50, 71
AgsI	TTSAA	5 cut(s)	60, 128, 135, 280, 400
AjnI	CCWGG	3 cut(s)	43, 246, 312
AluBI	AGCT	3 cut(s)	21, 202, 227
AluI	AGCT	3 cut(s)	21, 202, 227
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	237, 250
AoxI	GGCC	2 cut(s)	12, 305
ApoI	RAATTY	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	65, 86
BamHI	GGATCC	1 cut(s)	242
BccI	CCATC	3 cut(s)	65, 107, 293
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	45, 248, 314
BclI	TGATCA	2 cut(s)	36, 76
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	224, 228
Bme1390I	CCNGG	3 cut(s)	45, 248, 314
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	45, 248, 314
BmsI	GCATC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	246, 334, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 71
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	45, 248, 314
BseDI	CCNNGG	3 cut(s)	246, 334, 425
BseGI	GGATG	2 cut(s)	118, 213
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	50, 71
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	14, 307
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	50, 71
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	14, 307
Bsp143I	GATC	4 cut(s)	36, 76, 137, 242
BspANI	GGCC	2 cut(s)	14, 307
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	237, 250
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	246, 334, 425
BssMI	GATC	4 cut(s)	36, 76, 137, 242
BssT1I	CCWWGG	2 cut(s)	334, 425
Bst2UI	CCWGG	3 cut(s)	45, 248, 314
Bst4CI	ACNGT	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	118, 213
BstKTI	GATC	4 cut(s)	39, 79, 140, 245
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	4 cut(s)	36, 76, 137, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	3 cut(s)	45, 248, 314
BstSCI	CCNGG	3 cut(s)	43, 246, 312
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	14, 307
BtsCI	GGATG	2 cut(s)	118, 213
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 96
Cac8I	GCNNGC	1 cut(s)	234
CsiI	ACCWGGT	1 cut(s)	43
CviJI	RGCY	6 cut(s)	14, 21, 202, 227, 236, 307
CviKI_1	RGCY	6 cut(s)	14, 21, 202, 227, 236, 307
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	4 cut(s)	38, 78, 139, 244
DpnII	GATC	4 cut(s)	36, 76, 137, 242
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	334, 425
Eco57I	CTGAAG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRII	CCWGG	3 cut(s)	43, 246, 312
EcoT14I	CCWWGG	2 cut(s)	334, 425
ErhI	CCWWGG	2 cut(s)	334, 425
FaiI	YATR	3 cut(s)	86, 88, 221
FbaI	TGATCA	2 cut(s)	36, 76
FokI	GGATG	2 cut(s)	125, 220
FspBI	CTAG	2 cut(s)	224, 228
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	14, 307
HapII	CCGG	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	5 cut(s)	56, 128, 276, 339, 385
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	65, 86
Hpy188I	TCNGA	4 cut(s)	41, 70, 142, 367
Hpy188III	TCNNGA	4 cut(s)	135, 273, 389, 397
HpyAV	CCTTC	4 cut(s)	75, 163, 362, 370
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	352, 418
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	2 cut(s)	352, 418
Ksp22I	TGATCA	2 cut(s)	36, 76
Kzo9I	GATC	4 cut(s)	36, 76, 137, 242
LweI	GCATC	1 cut(s)	264
MabI	ACCWGGT	1 cut(s)	43
MaeI	CTAG	2 cut(s)	224, 228
MaeII	ACGT	2 cut(s)	352, 418
MalI	GATC	4 cut(s)	38, 78, 139, 244
MboI	GATC	4 cut(s)	36, 76, 137, 242
MboII	GAAGA	4 cut(s)	123, 302, 412, 415
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	2 cut(s)	143, 264
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	3 cut(s)	44, 297, 367
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	3 cut(s)	45, 248, 314
MvaI	CCWGG	3 cut(s)	45, 248, 314
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	4 cut(s)	36, 76, 137, 242
NlaIV	GGNNCC	1 cut(s)	244
PfeI	GAWTC	5 cut(s)	56, 128, 276, 339, 385
Psp6I	CCWGG	3 cut(s)	43, 246, 312
PspGI	CCWGG	3 cut(s)	43, 246, 312
PspN4I	GGNNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	242
Sau3AI	GATC	4 cut(s)	36, 76, 137, 242
ScrFI	CCNGG	3 cut(s)	45, 248, 314
SetI	ASST	9 cut(s)	23, 46, 55, 67, 84, 204, 229, 355, 421
SexAI	ACCWGGT	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	143, 264
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	2 cut(s)	224, 228
StyD4I	CCNGG	3 cut(s)	43, 246, 312
StyI	CCWWGG	2 cut(s)	334, 425
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	355, 421
TasI	AATT	2 cut(s)	143, 264
TfiI	GAWTC	5 cut(s)	56, 128, 276, 339, 385
TscAI	CASTG	2 cut(s)	39, 103
TspDTI	ATGAA	3 cut(s)	17, 41, 224
TspRI	CASTG	2 cut(s)	39, 103
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	2 cut(s)	224, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.