Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19265683 .. 19267165

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAGTCTTATGGCAAGTCACTCAAGATTCCCGGGCTGGTAAATGTTGACTTTGCTGATGTAAGGGTTATAATGGCGAATGCAGGTTCTTCATTGGTGGAGATAGGATCTGCAACTGGCAGAAAAAATAAAATGACTGGAGTTCTGTGTGAGTTAGCTATCAGATGTGGGATTTGCACAAAATATTTACTTCGAGGGTTAAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

69

Amino Acids

7.32

Weight (kDa)

9.45

Isoelectric Point (pI)

18.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	115
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	33, 34
AvaI	CYCGRG	1 cut(s)	32
BcnI	CCSGG	2 cut(s)	33, 34
BfuAI	ACCTGC	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	33, 34
BmeT110I	CYCGRG	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	33, 34
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	33, 34
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	121, 142
BseDI	CCNNGG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	121, 142
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	107
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	121, 142
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	31, 32
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	74
Cfr9I	CCCGGG	1 cut(s)	32
CviJI	RGCY	2 cut(s)	37, 158
CviKI_1	RGCY	2 cut(s)	37, 158
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	32
FaiI	YATR	2 cut(s)	12, 71
GsuI	CTGGAG	1 cut(s)	159
HapII	CCGG	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	5, 28
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	83, 113, 177
Kzo9I	GATC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	23, 46, 69, 102, 123
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	200
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	33, 34
Mva1269I	GAATGC	1 cut(s)	85
NciI	CCSGG	2 cut(s)	33, 34
NdeII	GATC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	33, 34
SetI	ASST	2 cut(s)	88, 160
SmaI	CCCGGG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SspI	AATATT	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	31, 32
TaqI	TCGA	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	81
TspMI	CCCGGG	1 cut(s)	32
XmaI	CCCGGG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.