Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006792.1

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

126048 .. 126699

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006792.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgaaactagtgatcagacctggtggaggtgattcaacaccttcagatggtgatcaggtcatatatcattgcactgttagaacattggtggagttattgttgaatcttcaagatcagaatttggtgccttctattacggcgagagtgctgttcgaaacgaaaatgcagtatgcaggtttagcttgggatgaactcaagcatattaggcaagccattggatccctggtgacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0000413 GO:0000902 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006457 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006807 GO:0007163 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009880 GO:0009987 GO:0010033 GO:0010154 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019752 GO:0022414 GO:0022622 GO:0030010 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042761 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0061077 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0090696 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_6 TPR_8

Protein Analysis

77

Amino Acids

8.54

Weight (kDa)

6.02

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	124
AclWI	GGATC	2 cut(s)	213, 226
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	26, 47
AgsI	TTSAA	3 cut(s)	36, 103, 110
AhlI	ACTAGT	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	19, 222
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	2 cut(s)	213, 226
ApoI	RAATTY	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	41, 62
AsuII	TTCGAA	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	124
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	21, 224
BclI	TGATCA	2 cut(s)	12, 52
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	21, 224
BmiI	GGNNCC	2 cut(s)	126, 220
BmrFI	CCNGG	2 cut(s)	21, 224
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 47
Bse3DI	GCAATG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	21, 224
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	26, 47
BseMI	GCAATG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	26, 47
Bsp119I	TTCGAA	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	12, 52, 112, 218
BspLI	GGNNCC	2 cut(s)	126, 220
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	213, 226
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	12, 52, 112, 218
Bst2UI	CCWGG	2 cut(s)	21, 224
Bst4CI	ACNGT	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	15, 55, 115, 221
BstMBI	GATC	4 cut(s)	12, 52, 112, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 205
BstNI	CCWGG	2 cut(s)	21, 224
BstSCI	CCNGG	2 cut(s)	19, 222
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	19
CviJI	RGCY	2 cut(s)	182, 212
CviKI_1	RGCY	2 cut(s)	182, 212
DpnI	GATC	4 cut(s)	14, 54, 114, 220
DpnII	GATC	4 cut(s)	12, 52, 112, 218
Eco57I	CTGAAG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	19, 222
FaiI	YATR	5 cut(s)	62, 64, 171, 201, 232
FbaI	TGATCA	2 cut(s)	12, 52
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	1 cut(s)	8
HinfI	GANTC	2 cut(s)	32, 103
HphI	GGTGA	2 cut(s)	41, 62
Hpy188I	TCNGA	3 cut(s)	17, 46, 117
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	51, 138
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	72, 166, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 205
Ksp22I	TGATCA	2 cut(s)	12, 52
Kzo9I	GATC	4 cut(s)	12, 52, 112, 218
LpnPI	CCDG	5 cut(s)	6, 33, 41, 159, 209
MabI	ACCWGGT	1 cut(s)	19
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	14, 54, 114, 220
MboI	GATC	4 cut(s)	12, 52, 112, 218
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	21, 224
MvaI	CCWGG	2 cut(s)	21, 224
MwoI	GCNNNNNNNGC	2 cut(s)	179, 205
NdeII	GATC	4 cut(s)	12, 52, 112, 218
NlaIV	GGNNCC	2 cut(s)	126, 220
NmuCI	GTSAC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	32, 103
Psp6I	CCWGG	2 cut(s)	19, 222
PspGI	CCWGG	2 cut(s)	19, 222
PspN4I	GGNNCC	2 cut(s)	126, 220
PsuI	RGATCY	1 cut(s)	218
Sau3AI	GATC	4 cut(s)	12, 52, 112, 218
ScrFI	CCNGG	2 cut(s)	21, 224
SetI	ASST	6 cut(s)	22, 31, 43, 60, 178, 184
SexAI	ACCWGGT	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	7
Sse9I	AATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	19, 222
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	32, 103
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	17, 204
TspRI	CASTG	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.