Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011598.1

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 1594

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgaattctgccagtgagagcaaagcggcaatagaggatgcaatgcatggtgcatacatggtcttcatagcagctggaatggctggaggaacaggcacaggtggggctcctgtagttgcaaaaatggcaaagtctctggtttcacagttgacaccagtaaatgaggcgtttaatttagcggatgatgttcttcagcagggtgtccgtggtatctctgaggttccaggtcttgtcaatgttgattttgctgaattaagagctatcatgaaagatgctggttccctcgcctatgggaataggccggaaccggaattggtggttatgattgatgatatttctgcagaatggaattataatctatgcatgcattctaactcggaaatttataacttgacaagcacaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

135

Amino Acids

14.22

Weight (kDa)

4.4

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	354, 387
AciI	CCGC	2 cut(s)	26, 179
AcsI	RAATTY	2 cut(s)	4, 381
AcuI	CTGAAG	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	2 cut(s)	74, 260
AluI	AGCT	2 cut(s)	74, 260
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	4, 381
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	111, 339
BisI	GCNGC	2 cut(s)	27, 72
BlsI	GCNGC	2 cut(s)	28, 73
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	4 cut(s)	108, 222, 280, 306
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	28, 262
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	12, 155
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	43, 187
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	12, 155
BseXI	GCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	302, 308
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	109
BspACI	CCGC	2 cut(s)	26, 179
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	108, 222, 280, 306
BspMAI	CTGCAG	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	12, 155
BssECI	CCNNGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	43, 187
BstMAI	GTCTC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 125
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	2 cut(s)	111, 339
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	301
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	43, 187
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	365
CciI	TCATGA	1 cut(s)	264
CviAII	CATG	4 cut(s)	47, 58, 265, 364
CviJI	RGCY	5 cut(s)	74, 83, 107, 260, 301
CviKI_1	RGCY	5 cut(s)	74, 83, 107, 260, 301
DdeI	CTNAG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	223
EcoT22I	ATGCAT	3 cut(s)	48, 365, 369
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	4 cut(s)	50, 61, 268, 367
FatI	CATG	4 cut(s)	46, 57, 264, 363
Fnu4HI	GCNGC	2 cut(s)	27, 72
FokI	GGATG	2 cut(s)	50, 194
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	27, 72
GluI	GCNGC	2 cut(s)	27, 72
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	2 cut(s)	302, 308
Hin1II	CATG	4 cut(s)	50, 61, 268, 367
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HpaII	CCGG	2 cut(s)	302, 308
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	217, 379
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	7 cut(s)	41, 46, 53, 119, 341, 363, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 125
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	50, 61, 268, 367
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	28, 262
MboII	GAAGA	2 cut(s)	55, 182
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	7 cut(s)	4, 172, 251, 311, 349, 381, 402
MnlI	CCTC	5 cut(s)	28, 80, 157, 211, 293
Mph1103I	ATGCAT	3 cut(s)	48, 365, 369
MseI	TTAA	3 cut(s)	171, 254, 406
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	302, 308
MspR9I	CCNGG	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	80, 125
NlaIII	CATG	4 cut(s)	50, 61, 268, 367
NlaIV	GGNNCC	4 cut(s)	108, 222, 280, 306
NsiI	ATGCAT	3 cut(s)	48, 365, 369
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	28, 73
PsiI	TTATAA	2 cut(s)	354, 387
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	4 cut(s)	108, 222, 280, 306
PstI	CTGCAG	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	171, 254, 406
SatI	GCNGC	2 cut(s)	27, 72
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	5 cut(s)	76, 103, 222, 229, 262
SfaNI	GCATC	2 cut(s)	28, 262
SfcI	CTRYAG	2 cut(s)	111, 339
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	7 cut(s)	4, 172, 251, 311, 349, 381, 402
SsiI	CCGC	2 cut(s)	26, 179
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	147
TasI	AATT	7 cut(s)	4, 172, 251, 311, 349, 381, 402
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	171, 254, 406
Tru9I	TTAA	3 cut(s)	171, 254, 406
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	17, 55, 281
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	4, 381
XceI	RCATGY	1 cut(s)	367
Zsp2I	ATGCAT	3 cut(s)	48, 365, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.