Rmu_sc0003069.1_g000050

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003069.1
OG0000552
Physical Location & Seq
Reverse (-)
221286 .. 221964
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003069.1_g000050.1.cds

Sequence Viewer

Length: 318 bp
atgaaaatagtggccggaagcttgatgaaagcagtgatgagacctggtggaggtgattcaacacctttagatggtgatcaggttgggcctacattacgctttctgaagccagtcatttatcattgcactgttagaacattggatgaagttatagttgaatcttcaagatcagaatttagtgagtgttgctcgtttagtaatgaggattatgtaaaagctggtttggctgagttggagcattggagctataaagcaacagatgaggttcagcttgggatgaactcgagcatactaggcaagccattggatccctggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
FKBP_C TPR_1 TPR_2 TPR_6 TPR_8

Protein Analysis

105

Amino Acids

11.54

Weight (kDa)

4.87

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 302, 315
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 50, 71
AgsI TTSAA 3 cut(s) 60, 158, 165
AjnI CCWGG 2 cut(s) 43, 311
AluBI AGCT 4 cut(s) 21, 218, 246, 271
AluI AGCT 4 cut(s) 21, 218, 246, 271
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 302, 315
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 2 cut(s) 12, 86
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 65, 86
AvaI CYCGRG 1 cut(s) 283
BamHI GGATCC 1 cut(s) 307
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 45, 313
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 45, 313
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 45, 313
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 71
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 45, 313
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 148, 282
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 50, 71
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 110
BshFI GGCC 2 cut(s) 14, 88
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 50, 71
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 14, 88
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 283
Bsp143I GATC 3 cut(s) 76, 167, 307
BspANI GGCC 2 cut(s) 14, 88
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 302, 315
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 3 cut(s) 76, 167, 307
Bst2UI CCWGG 2 cut(s) 45, 313
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 228
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 148, 282
BstKTI GATC 3 cut(s) 79, 170, 310
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 76, 167, 307
BstMWI GCNNNNNNNGC 2 cut(s) 224, 294
BstNI CCWGG 2 cut(s) 45, 313
BstSCI CCNGG 2 cut(s) 43, 311
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 2 cut(s) 14, 88
BtsCI GGATG 2 cut(s) 148, 282
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 126
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 86
CsiI ACCWGGT 1 cut(s) 43
CviJI RGCY 9 cut(s) 14, 21, 88, 109, 218, 227, 246, 271, 301
CviKI_1 RGCY 9 cut(s) 14, 21, 88, 109, 218, 227, 246, 271, 301
DdeI CTNAG 1 cut(s) 228
DpnI GATC 3 cut(s) 78, 169, 309
DpnII GATC 3 cut(s) 76, 167, 307
EaeI YGGCCR 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 43, 311
FaiI YATR 4 cut(s) 152, 210, 249, 290
FbaI TGATCA 1 cut(s) 76
FokI GGATG 2 cut(s) 155, 289
FspBI CTAG 1 cut(s) 293
HaeIII GGCC 2 cut(s) 14, 88
HapII CCGG 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 2 cut(s) 56, 158
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 65, 86
Hpy188I TCNGA 2 cut(s) 105, 172
Hpy188III TCNNGA 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 294
HpyF3I CTNAG 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 167, 307
LmnI GCTCC 2 cut(s) 235, 243
LpnPI CCDG 7 cut(s) 28, 30, 57, 65, 123, 204, 298
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 293
MalI GATC 3 cut(s) 78, 169, 309
MboI GATC 3 cut(s) 76, 167, 307
MboII GAAGA 1 cut(s) 153
MflI RGATCY 1 cut(s) 307
MluCI AATT 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 3 cut(s) 44, 196, 256
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 45, 313
MvaI CCWGG 2 cut(s) 45, 313
MwoI GCNNNNNNNGC 2 cut(s) 224, 294
NdeII GATC 3 cut(s) 76, 167, 307
NlaIV GGNNCC 1 cut(s) 309
PaeR7I CTCGAG 1 cut(s) 283
PfeI GAWTC 2 cut(s) 56, 158
Psp6I CCWGG 2 cut(s) 43, 311
PspGI CCWGG 2 cut(s) 43, 311
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 283
PsuI RGATCY 1 cut(s) 307
Sau3AI GATC 3 cut(s) 76, 167, 307
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 45, 313
SetI ASST 9 cut(s) 23, 46, 55, 67, 84, 220, 248, 267, 273
SexAI ACCWGGT 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 43, 311
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 284
TasI AATT 1 cut(s) 173
TfiI GAWTC 2 cut(s) 56, 158
TscAI CASTG 2 cut(s) 39, 133
TspDTI ATGAA 4 cut(s) 17, 41, 159, 293
TspRI CASTG 2 cut(s) 39, 133
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XhoI CTCGAG 1 cut(s) 283
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.