Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19186097 .. 19188890

Gene Structure 2794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43899

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGCCACGGCCTGTGCCCAGGTAAGATCTACGTGATTGCTGCTAAGAAGTCTTCAGGGAAGGTGGTGACTACGAAAAGAACAAAATTCAGCGGCTTCAACGCATTCTCGAACAGGGAAAGAGATGCTGCGTTAAATGCCATTCAATCACCTTTATTTGATATTGGTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTATATGAGGTAAATGCAGCAGCTGAGGTTATTTATGATCTTATTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGTTCAAGTTAGCATCACTCTAATTACTTCTGGATTCAAACACCAAGAAGAAAGTGATGGGAGGCCAATCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACACTCACGTTATCCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

169

Amino Acids

18.33

Weight (kDa)

9.07

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	36 - 119	1.3e-21	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	2 cut(s)	263, 299
AcsI	RAATTY	2 cut(s)	86, 280
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	100, 146, 323, 355, 475
AjnI	CCWGG	2 cut(s)	19, 387
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	263, 299
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	10, 380
ApeKI	GCWGC	4 cut(s)	41, 128, 239, 242
ApoI	RAATTY	2 cut(s)	86, 280
Asp700I	GAANNNNTTC	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	79, 141
BaeGI	GKGCMC	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	45, 430
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	28, 115, 251, 254
BccI	CCATC	2 cut(s)	316, 368
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	21, 389
BcoDI	GTCTC	1 cut(s)	393
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	5 cut(s)	42, 94, 129, 240, 243
BlsI	GCNGC	5 cut(s)	43, 95, 130, 241, 244
Bme1390I	CCNGG	2 cut(s)	21, 389
BmrFI	CCNGG	2 cut(s)	21, 389
BmsI	GCATC	2 cut(s)	115, 339
BpiI	GAAGAC	2 cut(s)	45, 430
Bpu10I	CCTNAGC	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	4 cut(s)	7, 19, 409, 500
Bse1I	ACTGG	2 cut(s)	187, 208
BseBI	CCWGG	2 cut(s)	21, 389
BseDI	CCNNGG	4 cut(s)	7, 19, 409, 500
BseMII	CTCAG	3 cut(s)	237, 328, 453
BseNI	ACTGG	2 cut(s)	187, 208
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	28, 115, 251, 254
BshFI	GGCC	2 cut(s)	12, 382
BsmAI	GTCTC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	12, 382
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	27, 259, 268, 304
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	12, 382
BspCNI	CTCAG	3 cut(s)	238, 327, 452
BspPI	GGATC	2 cut(s)	263, 299
BsrI	ACTGG	2 cut(s)	187, 208
BssECI	CCNNGG	4 cut(s)	7, 19, 409, 500
BssMI	GATC	4 cut(s)	27, 259, 268, 304
BssT1I	CCWWGG	2 cut(s)	409, 500
Bst2UI	CCWGG	2 cut(s)	21, 389
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	45, 246, 314, 439
BstDSI	CCRYGG	1 cut(s)	7
BstKTI	GATC	4 cut(s)	30, 262, 271, 307
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	4 cut(s)	27, 259, 268, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	21, 389
BstSCI	CCNGG	2 cut(s)	19, 387
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	4 cut(s)	28, 115, 251, 254
BstV2I	GAAGAC	2 cut(s)	45, 430
BstX2I	RGATCY	2 cut(s)	27, 304
BstYI	RGATCY	2 cut(s)	27, 304
BsuRI	GGCC	2 cut(s)	12, 382
BtgI	CCRYGG	1 cut(s)	7
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 322
CaiI	CAGNNNCTG	1 cut(s)	245
CviJI	RGCY	6 cut(s)	6, 12, 96, 179, 245, 382
CviKI_1	RGCY	6 cut(s)	6, 12, 96, 179, 245, 382
DdeI	CTNAG	4 cut(s)	45, 246, 314, 439
DpnI	GATC	4 cut(s)	29, 261, 270, 306
DpnII	GATC	4 cut(s)	27, 259, 268, 304
DraIII	CACNNNGTG	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	409, 500
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	19, 387
EcoT14I	CCWWGG	2 cut(s)	409, 500
ErhI	CCWWGG	2 cut(s)	409, 500
FaiI	YATR	5 cut(s)	170, 200, 226, 228, 258
Fnu4HI	GCNGC	5 cut(s)	42, 94, 129, 240, 243
Fsp4HI	GCNGC	5 cut(s)	42, 94, 129, 240, 243
GluI	GCNGC	5 cut(s)	42, 94, 129, 240, 243
HaeIII	GGCC	2 cut(s)	12, 382
HinfI	GANTC	3 cut(s)	351, 414, 460
HphI	GGTGA	2 cut(s)	79, 141
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	5 cut(s)	109, 193, 348, 464, 472
HpyAV	CCTTC	3 cut(s)	55, 437, 445
HpyCH4IV	ACGT	3 cut(s)	33, 427, 493
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	4 cut(s)	45, 246, 314, 439
HpySE526I	ACGT	3 cut(s)	33, 427, 493
Kzo9I	GATC	4 cut(s)	27, 259, 268, 304
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	4 cut(s)	28, 115, 251, 254
LweI	GCATC	2 cut(s)	115, 339
MaeII	ACGT	3 cut(s)	33, 427, 493
MaeIII	GTNAC	2 cut(s)	67, 298
MalI	GATC	4 cut(s)	29, 261, 270, 306
MboI	GATC	4 cut(s)	27, 259, 268, 304
MboII	GAAGA	5 cut(s)	45, 377, 435, 487, 490
MflI	RGATCY	2 cut(s)	27, 304
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	4 cut(s)	86, 186, 280, 339
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	168, 223, 241, 372, 442
MroXI	GAANNNNTTC	1 cut(s)	427
MseI	TTAA	2 cut(s)	134, 284
MspA1I	CMGCKG	2 cut(s)	93, 245
MspR9I	CCNGG	2 cut(s)	21, 389
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	2 cut(s)	21, 389
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	4 cut(s)	27, 259, 268, 304
NmuCI	GTSAC	2 cut(s)	67, 298
PctI	GAATGC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	351, 414, 460
PkrI	GCNGC	5 cut(s)	43, 95, 130, 241, 244
Ppu21I	YACGTR	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	19, 387
PspGI	CCWGG	2 cut(s)	19, 387
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	27, 304
PvuII	CAGCTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	134, 284
SatI	GCNGC	5 cut(s)	42, 94, 129, 240, 243
Sau3AI	GATC	4 cut(s)	27, 259, 268, 304
ScrFI	CCNGG	2 cut(s)	21, 389
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	9 cut(s)	25, 36, 66, 154, 234, 247, 252, 430, 496
SfaNI	GCATC	2 cut(s)	115, 339
Sse9I	AATT	4 cut(s)	86, 186, 280, 339
SsiI	CCGC	1 cut(s)	93
SspI	AATATT	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	19, 387
StyI	CCWWGG	2 cut(s)	409, 500
TaiI	ACGT	3 cut(s)	36, 430, 496
TaqI	TCGA	2 cut(s)	110, 421
TasI	AATT	4 cut(s)	86, 186, 280, 339
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	351, 414, 460
Tru1I	TTAA	2 cut(s)	134, 284
Tru9I	TTAA	2 cut(s)	134, 284
TscAI	CASTG	2 cut(s)	303, 322
TseFI	GTSAC	2 cut(s)	67, 298
TseI	GCWGC	4 cut(s)	41, 128, 239, 242
Tsp45I	GTSAC	2 cut(s)	67, 298
TspRI	CASTG	2 cut(s)	303, 322
XapI	RAATTY	2 cut(s)	86, 280
XmnI	GAANNNNTTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.