RLG00000019977

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000552
Physical Location & Seq
Reverse (-)
59481902 .. 59482714
813 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019977

Sequence Viewer

Length: 642 bp
ATGGGTATGATGGCCTTTGTCTGGGGCTTCCGCAATCGCCTGACAAACCGGGAGCAGGCCGAGCAGTGGTTGAAGATGGTGGATGGAGGACAGTGTCTTGATGACGGAGGAGCTGTTGCTTTGGTTAGTTCAATGCTGGGATCAGTGCTACAGCTTGACAAGCTAGGCAATTTGTCGTCGACTTACGAGTTTACCTTCGGCACCTCCGCAACCATCCGCTTCAGGTATAAACAACTGGTTAGTGTTTGCAGGGTGTATGGGATGCTGGAGCACTCAGAAGAAGGTTGTTCGGCTACCAGCGCACTGTCACTGAACCCTAGACCAAACGCCAGCCCCGCTAGGGTTTCTAAGGCATCGAACATGCAAGTCGTTTCTTCTAGAATTTCCAAGTTGGTTGCAAGCGTAATCCCAGCCACCAAACTTATTCACCTCCACCTCGAGGTCATTTACCTTCTCCAATCTCGCATCCCTGCTGAGTTATTGACTGCTCAACTAGCACAGTTTAAGTCAAAGTCGACTATGCCTATTTTGAAGGCTGCTGTGCCTACTTCTGTGGCATATCTTGCGCCCTTGGCTCTTATAACAAATAAGAAGAGGGCATCATCATTGGCTCTGGTCCCTACACAAAGCGTACGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.12

Weight (kDa)

9.92

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AbsI CCTCGAGG 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 2 cut(s) 179, 515
AciI CCGC 4 cut(s) 31, 207, 217, 336
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 205
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 5 cut(s) 21, 55, 66, 340, 439
AgsI TTSAA 3 cut(s) 73, 132, 532
AluBI AGCT 4 cut(s) 113, 154, 163, 639
AluI AGCT 4 cut(s) 113, 154, 163, 639
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 12, 57
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 381
AspLEI GCGC 2 cut(s) 302, 568
AspS9I GGNCC 1 cut(s) 616
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 523
BccI CCATC 4 cut(s) 4, 70, 77, 221
BcnI CCSGG 1 cut(s) 50
BfaI CTAG 6 cut(s) 164, 318, 339, 378, 494, 640
BfmI CTRYAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 616
BmiI GGNNCC 2 cut(s) 202, 618
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 4 cut(s) 252, 362, 474, 608
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 570
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 55, 66, 340, 439
Bse1I ACTGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 4 cut(s) 88, 213, 267, 465
BseLI CCNNNNNNNGG 5 cut(s) 21, 55, 66, 340, 439
BseMII CTCAG 2 cut(s) 288, 465
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 523
BseYI CCCAGC 2 cut(s) 136, 409
BshFI GGCC 2 cut(s) 14, 59
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 49
BsiWI CGTACG 1 cut(s) 631
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 5 cut(s) 21, 55, 66, 340, 439
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 2 cut(s) 14, 59
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 4 cut(s) 31, 207, 217, 336
BspANI GGCC 2 cut(s) 14, 59
BspCNI CTCAG 2 cut(s) 287, 466
BspLI GGNNCC 2 cut(s) 202, 618
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 570
Bst4CI ACNGT 3 cut(s) 93, 306, 501
Bst6I CTCTTC 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 3 cut(s) 57, 331, 400
BstDEI CTNAG 3 cut(s) 274, 348, 474
BstF5I GGATG 4 cut(s) 88, 213, 267, 465
BstHHI GCGC 2 cut(s) 302, 568
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 8 cut(s) 61, 160, 299, 335, 494, 563, 572, 636
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 523
BsuRI GGCC 2 cut(s) 14, 59
BtsCI GGATG 4 cut(s) 88, 213, 267, 465
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 5 cut(s) 71, 98, 150, 302, 308
Cac8I GCNNGC 3 cut(s) 57, 331, 400
CfoI GCGC 2 cut(s) 302, 568
Cfr13I GGNCC 1 cut(s) 616
Csp6I GTAC 1 cut(s) 632
CviAII CATG 1 cut(s) 361
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 3 cut(s) 274, 348, 474
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 1 cut(s) 364
FaiI YATR 7 cut(s) 8, 228, 258, 362, 521, 559, 581
FaqI GGGAC 1 cut(s) 602
FatI CATG 1 cut(s) 360
FauI CCCGC 1 cut(s) 343
FblI GTMKAC 2 cut(s) 179, 515
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 4 cut(s) 95, 200, 274, 452
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 6 cut(s) 164, 318, 339, 378, 494, 640
GlaI GCGC 2 cut(s) 301, 567
GluI GCNGC 1 cut(s) 537
GsaI CCCAGC 2 cut(s) 140, 413
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 14, 59
HapII CCGG 1 cut(s) 49
HhaI GCGC 2 cut(s) 302, 568
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 2 cut(s) 300, 566
HinP1I GCGC 2 cut(s) 300, 566
HincII GTYRAC 2 cut(s) 180, 516
HindII GTYRAC 2 cut(s) 180, 516
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 3 cut(s) 180, 192, 516
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 98, 378
Hpy8I GTNNAC 3 cut(s) 180, 192, 516
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 4 cut(s) 205, 275, 461, 526
HpyCH4III ACNGT 3 cut(s) 93, 306, 501
HpyCH4V TGCA 3 cut(s) 249, 364, 398
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 160, 299, 335, 494, 563, 572, 636
HpyF3I CTNAG 3 cut(s) 274, 348, 474
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 2 cut(s) 300, 566
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 52, 110, 268
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 4 cut(s) 252, 362, 474, 608
MaeI CTAG 6 cut(s) 164, 318, 339, 378, 494, 640
MaeIII GTNAC 1 cut(s) 306
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 4 cut(s) 85, 290, 366, 604
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 169, 381
MnlI CCTC 7 cut(s) 80, 101, 214, 433, 440, 446, 588
MseI TTAA 1 cut(s) 504
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 50
MwoI GCNNNNNNNGC 8 cut(s) 61, 160, 299, 335, 494, 563, 572, 636
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 140
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 2 cut(s) 202, 618
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 306
NspI RCATGY 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 437
Pfl23II CGTACG 1 cut(s) 631
PflFI GACNNNGTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 538
PsiI TTATAA 1 cut(s) 581
PspFI CCCAGC 2 cut(s) 136, 409
PspLI CGTACG 1 cut(s) 631
PspN4I GGNNCC 2 cut(s) 202, 618
PspPI GGNCC 1 cut(s) 616
PspXI VCTCGAGB 1 cut(s) 437
PsyI GACNNNGTC 1 cut(s) 93
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
SalI GTCGAC 2 cut(s) 178, 514
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 616
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 4 cut(s) 252, 362, 474, 608
SfcI CTRYAG 1 cut(s) 149
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 616
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 169, 381
SsiI CCGC 4 cut(s) 31, 207, 217, 336
SspMI CTAG 6 cut(s) 164, 318, 339, 378, 494, 640
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 93, 306, 501
TaqI TCGA 4 cut(s) 179, 356, 438, 515
TasI AATT 2 cut(s) 169, 381
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 5 cut(s) 71, 98, 150, 309, 315
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 5 cut(s) 71, 98, 150, 309, 315
Tth111I GACNNNGTC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 616
XapI RAATTY 1 cut(s) 381
XbaI TCTAGA 1 cut(s) 377
XceI RCATGY 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 179, 515
XspI CTAG 6 cut(s) 164, 318, 339, 378, 494, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.