Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19214087 .. 19216386

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCATACTACAGGGAGCTAGCCAACAGCTGCCAACGGGTTCCACCTTTCTTTACTCTGAATTTTGTTTTAGTAGGGTAAATGCTGCAGCAGAGGTTATATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGTAGATATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTGTCAGAAGGTAGTTCAGTCAAGATTCCCGATTTCTTGAAGAAGAAAAGGATGCTCACGTTATCCAGTTTGAAATGCTTCCTTTTTTATTCCAATGAGTGCCTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

130

Amino Acids

14.17

Weight (kDa)

6.21

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	23 - 68	3e-08	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	110, 146
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	62, 127
AdeI	CACNNNGTG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	202, 322, 355
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	20, 31
AluI	AGCT	2 cut(s)	20, 31
AlwI	GGATC	2 cut(s)	110, 146
AoxI	GGCC	2 cut(s)	3, 227
ApeKI	GCWGC	3 cut(s)	31, 86, 89
ApoI	RAATTY	2 cut(s)	62, 127
Asp700I	GAANNNNTTC	2 cut(s)	274, 359
AsuNHI	GCTAGC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	18, 73, 101
BccI	CCATC	2 cut(s)	163, 215
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	11, 87
BisI	GCNGC	3 cut(s)	32, 87, 90
BlsI	GCNGC	3 cut(s)	33, 88, 91
Bme1390I	CCNGG	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	186, 324
BmtI	GCTAGC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	199, 348
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	2 cut(s)	199, 348
BseXI	GCAGC	3 cut(s)	18, 73, 101
BshFI	GGCC	2 cut(s)	5, 229
BsnI	GGCC	2 cut(s)	5, 229
Bsp143I	GATC	3 cut(s)	106, 115, 151
BspANI	GGCC	2 cut(s)	5, 229
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	110, 146
BsrI	ACTGG	2 cut(s)	199, 348
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	106, 115, 151
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	109, 118, 154
BstMBI	GATC	3 cut(s)	106, 115, 151
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	11, 87
BstV1I	GCAGC	3 cut(s)	18, 73, 101
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	5, 229
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 169
Cac8I	GCNNGC	1 cut(s)	22
CviJI	RGCY	5 cut(s)	5, 20, 24, 31, 229
CviKI_1	RGCY	5 cut(s)	5, 20, 24, 31, 229
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	3 cut(s)	108, 117, 153
DpnII	GATC	3 cut(s)	106, 115, 151
DraIII	CACNNNGTG	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaiI	YATR	4 cut(s)	8, 101, 103, 105
Fnu4HI	GCNGC	3 cut(s)	32, 87, 90
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	3 cut(s)	32, 87, 90
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	3 cut(s)	32, 87, 90
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	5, 229
HinfI	GANTC	3 cut(s)	198, 261, 307
Hpy188I	TCNGA	3 cut(s)	61, 289, 392
Hpy188III	TCNNGA	3 cut(s)	304, 311, 319
HpyAV	CCTTC	2 cut(s)	284, 285
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	106, 115, 151
LmnI	GCTCC	2 cut(s)	17, 140
LpnPI	CCDG	4 cut(s)	180, 221, 248, 361
Lsp1109I	GCAGC	3 cut(s)	18, 73, 101
LweI	GCATC	2 cut(s)	186, 324
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	108, 117, 153
MboI	GATC	3 cut(s)	106, 115, 151
MboII	GAAGA	4 cut(s)	224, 282, 334, 337
MflI	RGATCY	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	62, 127, 186
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	88, 219, 289
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	274, 359
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	106, 115, 151
NheI	GCTAGC	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	145
PdmI	GAANNNNTTC	2 cut(s)	274, 359
PfeI	GAWTC	3 cut(s)	198, 261, 307
PkrI	GCNGC	3 cut(s)	33, 88, 91
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	3 cut(s)	32, 87, 90
Sau3AI	GATC	3 cut(s)	106, 115, 151
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	7 cut(s)	22, 33, 50, 99, 277, 295, 344
SfaNI	GCATC	2 cut(s)	186, 324
SfcI	CTRYAG	2 cut(s)	11, 87
Sse9I	AATT	3 cut(s)	62, 127, 186
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	62, 127, 186
TfiI	GAWTC	3 cut(s)	198, 261, 307
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	2 cut(s)	150, 169
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	31, 86, 89
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	2 cut(s)	150, 169
XapI	RAATTY	2 cut(s)	62, 127
XmnI	GAANNNNTTC	2 cut(s)	274, 359
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.