Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19171603 .. 19190880

Gene Structure 19278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG212400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATTCTTTTTCATATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTGCCATCACCTCAGTGTTCAAATAATGAATCTTCGAAAAGTGGAAAGAAGGCAACGAAAGTATGCCGCGGAACTCCTCGACATGGACAGACTGCTAGAGCACTTGCAAAACAGGCAAACGGAACTGAGGATAATGCTAGAAAATTGAAACTGATAGTAATTCCAAATGACAAGCTATTGACTGCAGTTTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTAGCTGACGATATTTTACAACAAGGGGTGTTCATGATTCCGGGGCTGGCAAATGTCGACTTTGCTGATGTAAGGGCTATAATGGTGAATGCGGGTTCTTCATTGATGGGGATAGGAACTGCAACTGGGAAGACAAGGGCAAGAGATGCTGCTTTAAATGCCATTCAATCATCTTTATTAGATATTGTTATAGAGAGATCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACGCTATGAGGTAAATGCTGCAGCAGAGGTTTTATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGATATTACCCTTGGAATCAATCGAAGACCTTCCTCCTTGTCAGAAGGTAGTTCAGTCGATATTCCTGATTTCTTGAAGAAGAAAAGGATGCTCACGTTATCCTGTTTGAAATGCTTCCTTTTTATTCCAATGAGTGCCTTGTCTGAGGCCTCCCAGCCTCTTCATTACCACATCAGCATCAATCTGAGGGATTTAAGTATGCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

347

Amino Acids

37.59

Weight (kDa)

8.61

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	4 - 87	2e-24	PRONE (Plant-specific Rop nucleotide exchanger)
FtsZ_C	PF12327	170 - 264	1.3e-25	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	389, 471
AccII	CGCG	1 cut(s)	261
AciI	CCGC	3 cut(s)	259, 261, 506
AclWI	GGATC	2 cut(s)	698, 734
AcsI	RAATTY	1 cut(s)	715
AdeI	CACNNNGTG	1 cut(s)	752
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	8 cut(s)	92, 105, 213, 340, 581, 790, 910, 943
AjnI	CCWGG	2 cut(s)	169, 822
AleI	CACNNNNGTG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	32, 367, 419
AluI	AGCT	3 cut(s)	32, 367, 419
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	698, 734
AoxI	GGCC	2 cut(s)	815, 981
ApeKI	GCWGC	4 cut(s)	193, 563, 674, 677
ApoI	RAATTY	1 cut(s)	715
Asp700I	GAANNNNTTC	2 cut(s)	862, 947
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	192, 511
AsuII	TTCGAA	1 cut(s)	227
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	551, 865
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	4 cut(s)	180, 550, 661, 689
BccI	CCATC	5 cut(s)	180, 205, 514, 751, 803
BciT130I	CCWGG	2 cut(s)	171, 824
BciVI	GTATCC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	456
BfaI	CTAG	3 cut(s)	288, 330, 416
BfmI	CTRYAG	3 cut(s)	375, 675, 1040
BfrI	CTTAAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	5 cut(s)	194, 259, 564, 675, 678
BlsI	GCNGC	5 cut(s)	195, 260, 565, 676, 679
Bme1390I	CCNGG	3 cut(s)	171, 456, 824
BmrFI	CCNGG	3 cut(s)	171, 456, 824
BmrI	ACTGGG	3 cut(s)	379, 389, 549
BmsI	GCATC	5 cut(s)	72, 550, 774, 912, 1020
BmuI	ACTGGG	3 cut(s)	379, 389, 549
BpiI	GAAGAC	2 cut(s)	551, 865
BpmI	CTGGAG	2 cut(s)	153, 806
Bpu14I	TTCGAA	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	259, 455, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	6 cut(s)	385, 395, 544, 622, 643, 787
BseBI	CCWGG	2 cut(s)	171, 824
BseDI	CCNNGG	3 cut(s)	259, 455, 844
BseGI	GGATG	1 cut(s)	927
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	6 cut(s)	108, 218, 309, 763, 969, 1010
BseNI	ACTGG	6 cut(s)	385, 395, 544, 622, 643, 787
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	4 cut(s)	180, 550, 661, 689
BseYI	CCCAGC	1 cut(s)	987
BsgI	GTGCAG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	817, 983
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	817, 983
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	611, 694, 703, 739
BspACI	CCGC	3 cut(s)	259, 261, 506
BspANI	GGCC	2 cut(s)	817, 983
BspCNI	CTCAG	6 cut(s)	109, 217, 310, 762, 970, 1011
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	447
BspMAI	CTGCAG	2 cut(s)	379, 679
BspPI	GGATC	2 cut(s)	698, 734
BspT104I	TTCGAA	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	65
BsrI	ACTGG	6 cut(s)	385, 395, 544, 622, 643, 787
BssECI	CCNNGG	3 cut(s)	259, 455, 844
BssMI	GATC	4 cut(s)	611, 694, 703, 739
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	844
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	171, 824
Bst6I	CTCTTC	1 cut(s)	999
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	6 cut(s)	117, 204, 318, 749, 978, 1019
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	927
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	4 cut(s)	614, 697, 706, 742
BstMBI	GATC	4 cut(s)	611, 694, 703, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 560, 572
BstNI	CCWGG	2 cut(s)	171, 824
BstSCI	CCNGG	3 cut(s)	169, 454, 822
BstSFI	CTRYAG	3 cut(s)	375, 675, 1040
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	4 cut(s)	180, 550, 661, 689
BstV2I	GAAGAC	2 cut(s)	551, 865
BstX2I	RGATCY	2 cut(s)	611, 739
BstYI	RGATCY	2 cut(s)	611, 739
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	817, 983
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	927
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	3 cut(s)	212, 738, 757
Cac8I	GCNNGC	1 cut(s)	462
CciI	TCATGA	1 cut(s)	447
Cfr42I	CCGCGG	1 cut(s)	262
CviAII	CATG	2 cut(s)	275, 448
CviJI	RGCY	9 cut(s)	32, 193, 367, 419, 460, 491, 817, 983, 991
CviKI_1	RGCY	9 cut(s)	32, 193, 367, 419, 460, 491, 817, 983, 991
DdeI	CTNAG	6 cut(s)	117, 204, 318, 749, 978, 1019
DpnI	GATC	4 cut(s)	613, 696, 705, 741
DpnII	GATC	4 cut(s)	611, 694, 703, 739
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco130I	CCWWGG	1 cut(s)	844
Eco147I	AGGCCT	1 cut(s)	983
EcoRII	CCWGG	2 cut(s)	169, 822
EcoT14I	CCWWGG	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	844
FaeI	CATG	2 cut(s)	278, 451
FatI	CATG	2 cut(s)	274, 447
FauI	CCCGC	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	389, 471
Fnu4HI	GCNGC	5 cut(s)	194, 259, 564, 675, 678
FokI	GGATG	1 cut(s)	934
Fsp4HI	GCNGC	5 cut(s)	194, 259, 564, 675, 678
FspBI	CTAG	3 cut(s)	288, 330, 416
GluI	GCNGC	5 cut(s)	194, 259, 564, 675, 678
GsaI	CCCAGC	1 cut(s)	991
GsuI	CTGGAG	2 cut(s)	153, 806
HaeIII	GGCC	2 cut(s)	817, 983
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	2 cut(s)	278, 451
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	8 cut(s)	4, 22, 77, 101, 221, 451, 786, 849
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	192, 511
Hpy166II	GTNNAC	2 cut(s)	390, 472
Hpy188I	TCNGA	5 cut(s)	27, 177, 877, 979, 1020
Hpy188III	TCNNGA	4 cut(s)	448, 628, 899, 907
Hpy8I	GTNNAC	2 cut(s)	390, 472
HpyAV	CCTTC	5 cut(s)	128, 146, 235, 872, 873
HpyCH4IV	ACGT	1 cut(s)	929
HpyCH4V	TGCA	5 cut(s)	38, 299, 377, 536, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 560, 572
HpyF3I	CTNAG	6 cut(s)	117, 204, 318, 749, 978, 1019
HpySE526I	ACGT	1 cut(s)	929
Hsp92II	CATG	2 cut(s)	278, 451
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	611, 694, 703, 739
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	4 cut(s)	180, 550, 661, 689
LweI	GCATC	5 cut(s)	72, 550, 774, 912, 1020
MaeI	CTAG	3 cut(s)	288, 330, 416
MaeII	ACGT	1 cut(s)	929
MaeIII	GTNAC	2 cut(s)	397, 733
MalI	GATC	4 cut(s)	613, 696, 705, 741
MboI	GATC	4 cut(s)	611, 694, 703, 739
MboII	GAAGA	9 cut(s)	47, 216, 504, 556, 812, 870, 922, 925, 986
MflI	RGATCY	2 cut(s)	611, 739
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	5 cut(s)	335, 351, 621, 715, 774
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	54, 731
MroXI	GAANNNNTTC	2 cut(s)	862, 947
MseI	TTAA	5 cut(s)	66, 411, 569, 719, 1028
MslI	CAYNNNNRTG	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	261
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	3 cut(s)	171, 456, 824
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	171, 824
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	305, 560, 572
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	4 cut(s)	611, 694, 703, 739
NlaIII	CATG	2 cut(s)	278, 451
NmuCI	GTSAC	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	983
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	2 cut(s)	862, 947
PfeI	GAWTC	7 cut(s)	4, 22, 101, 221, 451, 786, 849
PkrI	GCNGC	5 cut(s)	195, 260, 565, 676, 679
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	169, 822
PspFI	CCCAGC	1 cut(s)	987
PspGI	CCWGG	2 cut(s)	169, 822
PstI	CTGCAG	2 cut(s)	379, 679
PsuI	RGATCY	2 cut(s)	611, 739
RseI	CAYNNNNRTG	1 cut(s)	205
SacII	CCGCGG	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	470
SaqAI	TTAA	5 cut(s)	66, 411, 569, 719, 1028
SatI	GCNGC	5 cut(s)	194, 259, 564, 675, 678
Sau3AI	GATC	4 cut(s)	611, 694, 703, 739
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	171, 456, 824
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	5 cut(s)	72, 550, 774, 912, 1020
SfcI	CTRYAG	3 cut(s)	375, 675, 1040
Sfr303I	CCGCGG	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	5 cut(s)	335, 351, 621, 715, 774
SseBI	AGGCCT	1 cut(s)	983
SsiI	CCGC	3 cut(s)	259, 261, 506
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	3 cut(s)	288, 330, 416
StuI	AGGCCT	1 cut(s)	983
StyD4I	CCNGG	3 cut(s)	169, 454, 822
StyI	CCWWGG	1 cut(s)	844
TaiI	ACGT	1 cut(s)	932
TaqI	TCGA	6 cut(s)	80, 227, 271, 471, 856, 891
TasI	AATT	5 cut(s)	335, 351, 621, 715, 774
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	7 cut(s)	4, 22, 101, 221, 451, 786, 849
Tru1I	TTAA	5 cut(s)	66, 411, 569, 719, 1028
Tru9I	TTAA	5 cut(s)	66, 411, 569, 719, 1028
TscAI	CASTG	3 cut(s)	212, 738, 757
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	4 cut(s)	193, 563, 674, 677
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	4 cut(s)	234, 436, 504, 986
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	212, 738, 757
Vha464I	CTTAAG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	715
XmiI	GTMKAC	2 cut(s)	389, 471
XmnI	GAANNNNTTC	2 cut(s)	862, 947
XspI	CTAG	3 cut(s)	288, 330, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.