Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Reverse (-)

258648 .. 262096

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgctgcccgagagcaagtttggatttttgggtgcaatccataagtcgactttgcctcagtttaagtgctcggccagctctcacagtgtgggttcgtatccgaataaagacccttttctgaatctacaccctgaggtttctatgcttagaggtgagggcaatcatacgtcgagcaatctgaggaaagatactccaggtggcaatgtgactgagagcttgagtgagaaatctcttccgaataattacaacgaagcaaagattaaggttattggtgttggtggtggagggtcaaatgcagtcaatcgtatgattgagagtgcaatgaagggtgtggagttctggattgttaacactgatgttcaagccatgagaatgtcacctgtgtttcctgagaaccgtttacaaatcggtcaagagcttaccaggggtcttggtgctggtgggaacccggatgttggtatgaatgctgccaaagaaagcagagaatcgatagaagaagcactatatgggtcagacatggttttcgttacggctggaatgggtggaggaactggcactggcggagctcctgtagttgcaggtgttgcaaaatcaatgggtatattgacggttggtgttgtgacaacccctttctcctttgagggacgaaaaagggcagttcaagcccaggaagggattgcagctttgagagagaatgttgacacactgatagtcattccaaatgacaagttattgactgcagtctcccagtctaccccagtaacagaggcatttaatctggctgatgatattttacgacaaggtgttcgtggtatctctgatataatcacgattcctgggctggtaaatgtcgactttgctgatgtaagggctataatggcgaatgcaggttcttcattgatggggataggaactgcaactgggaagacaagggcaagagatgctgcgttaaatgccattcaatcacctctattagatatcggtatagagagggctactggaatcgtctggaacataactggtggaactgatttgacactctatgaggtaaatgctgcagcagaggttatatatgaccttgttgatccaacagcaaatttaatatttggagcagtgacagatccatcactcagtggtcaagttagcatcactctaattgctactggattcaaacgccaagaagaaagtgatgggaggccactccaggtattcctcatagctcactctatctcggtttctccatacttgtctctcgacaattttattaaaataccaaattgcaggcacaaggagacattacccttggaatcaatcgaagaccttcctccttctcagaaggtagttcagttgagattcctgatttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

455

Amino Acids

48.16

Weight (kDa)

5.33

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	2 cut(s)	569, 878
AccI	GTMKAC	3 cut(s)	47, 752, 852
AciI	CCGC	1 cut(s)	561
AclWI	GGATC	2 cut(s)	1079, 1115
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	1096
AdeI	CACNNNGTG	2 cut(s)	88, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	455, 672
AgsI	TTSAA	4 cut(s)	362, 662, 962, 1171
AjnI	CCWGG	5 cut(s)	193, 422, 666, 835, 1203
AluBI	AGCT	6 cut(s)	78, 216, 418, 566, 683, 1220
AluI	AGCT	6 cut(s)	78, 216, 418, 566, 683, 1220
Alw21I	GWGCWC	2 cut(s)	71, 568
Alw26I	GTCTC	3 cut(s)	748, 1254, 1286
AlwI	GGATC	2 cut(s)	1079, 1115
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	72, 1196
ApeKI	GCWGC	6 cut(s)	4, 467, 680, 944, 1055, 1058
ApoI	RAATTY	1 cut(s)	1096
ArsI	GACNNNNNNTTYG	4 cut(s)	506, 538, 789, 821
Asp700I	GAANNNNTTC	1 cut(s)	1320
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	164, 369, 957
AvaI	CYCGRG	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	932, 1323
Bbv12I	GWGCWC	2 cut(s)	71, 568
BbvI	GCAGC	5 cut(s)	454, 692, 931, 1042, 1070
BccI	CCATC	3 cut(s)	895, 1132, 1184
BceAI	ACGGC	1 cut(s)	546
BciT130I	CCWGG	5 cut(s)	195, 424, 668, 837, 1205
BciVI	GTATCC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	3 cut(s)	748, 1254, 1286
BfmI	CTRYAG	3 cut(s)	570, 738, 1056
BfuAI	ACCTGC	2 cut(s)	569, 878
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	6 cut(s)	5, 468, 681, 945, 1056, 1059
BlsI	GCNGC	6 cut(s)	6, 469, 682, 946, 1057, 1060
Bme1390I	CCNGG	6 cut(s)	195, 424, 449, 668, 837, 1205
BmeT110I	CYCGRG	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	6 cut(s)	195, 424, 449, 668, 837, 1205
BmrI	ACTGGG	3 cut(s)	742, 752, 930
BmsI	GCATC	2 cut(s)	931, 1155
BmuI	ACTGGG	3 cut(s)	742, 752, 930
BoxI	GACNNNNGTC	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	932, 1323
BpmI	CTGGAG	2 cut(s)	177, 1187
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	449
Bsa29I	ATCGAT	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	423, 666, 836, 1302
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 672
Bse1I	ACTGG	8 cut(s)	556, 562, 748, 758, 925, 1003, 1024, 1168
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	208, 327
BseBI	CCWGG	5 cut(s)	195, 424, 668, 837, 1205
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	4 cut(s)	423, 666, 836, 1302
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	455, 672
BseMI	GCAATG	2 cut(s)	208, 327
BseMII	CTCAG	7 cut(s)	71, 123, 170, 201, 381, 1144, 1346
BseNI	ACTGG	8 cut(s)	556, 562, 748, 758, 925, 1003, 1024, 1168
BseXI	GCAGC	5 cut(s)	454, 692, 931, 1042, 1070
BshFI	GGCC	2 cut(s)	74, 1198
BshVI	ATCGAT	1 cut(s)	488
BsiHKAI	GWGCWC	2 cut(s)	71, 568
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	2 cut(s)	455, 672
BsmAI	GTCTC	3 cut(s)	748, 1254, 1286
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	2 cut(s)	469, 889
BsnI	GGCC	2 cut(s)	74, 1198
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	71, 568
Bsp143I	GATC	2 cut(s)	1084, 1120
BspACI	CCGC	1 cut(s)	561
BspANI	GGCC	2 cut(s)	74, 1198
BspCNI	CTCAG	7 cut(s)	70, 124, 171, 202, 382, 1143, 1345
BspDI	ATCGAT	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	446
BspMAI	CTGCAG	2 cut(s)	742, 1060
BspMI	ACCTGC	2 cut(s)	569, 878
BspPI	GGATC	2 cut(s)	1079, 1115
BsrDI	GCAATG	2 cut(s)	208, 327
BsrI	ACTGG	8 cut(s)	556, 562, 748, 758, 925, 1003, 1024, 1168
BssECI	CCNNGG	4 cut(s)	423, 666, 836, 1302
BssMI	GATC	2 cut(s)	1084, 1120
BssT1I	CCWWGG	1 cut(s)	1302
Bst2UI	CCWGG	5 cut(s)	195, 424, 668, 837, 1205
Bst4CI	ACNGT	3 cut(s)	86, 398, 610
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	2 cut(s)	584, 941
BstC8I	GCNNGC	2 cut(s)	76, 1283
BstDEI	CTNAG	8 cut(s)	57, 132, 146, 179, 210, 390, 1130, 1332
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	2 cut(s)	1087, 1123
BstMAI	GTCTC	3 cut(s)	748, 1254, 1286
BstMBI	GATC	2 cut(s)	1084, 1120
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 584, 662, 878, 941, 953
BstNI	CCWGG	5 cut(s)	195, 424, 668, 837, 1205
BstPAI	GACNNNNGTC	1 cut(s)	740
BstSCI	CCNGG	6 cut(s)	193, 422, 447, 666, 835, 1203
BstSFI	CTRYAG	3 cut(s)	570, 738, 1056
BstV1I	GCAGC	5 cut(s)	454, 692, 931, 1042, 1070
BstV2I	GAAGAC	2 cut(s)	932, 1323
BstX2I	RGATCY	1 cut(s)	1120
BstYI	RGATCY	1 cut(s)	1120
Bsu15I	ATCGAT	1 cut(s)	488
Bsu36I	CCTNAGG	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	74, 1198
BsuTUI	ATCGAT	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	6 cut(s)	91, 351, 555, 704, 1119, 1138
BveI	ACCTGC	2 cut(s)	569, 878
Cac8I	GCNNGC	2 cut(s)	76, 1283
ClaI	ATCGAT	1 cut(s)	488
CviAII	CATG	2 cut(s)	367, 517
DdeI	CTNAG	8 cut(s)	57, 132, 146, 179, 210, 390, 1130, 1332
DpnI	GATC	2 cut(s)	1086, 1122
DpnII	GATC	2 cut(s)	1084, 1120
DraIII	CACNNNGTG	2 cut(s)	88, 1133
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	576
Ecl136II	GAGCTC	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	1302
Eco24I	GRGCYC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	979
Eco53kI	GAGCTC	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	566
EcoRII	CCWGG	5 cut(s)	193, 422, 666, 835, 1203
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	1302
EcoT38I	GRGCYC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	1302
FaeI	CATG	2 cut(s)	370, 520
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	2 cut(s)	366, 516
FblI	GTMKAC	3 cut(s)	47, 752, 852
Fnu4HI	GCNGC	6 cut(s)	5, 468, 681, 945, 1056, 1059
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	6 cut(s)	5, 468, 681, 945, 1056, 1059
GluI	GCNGC	6 cut(s)	5, 468, 681, 945, 1056, 1059
GsuI	CTGGAG	2 cut(s)	177, 1187
HaeIII	GGCC	2 cut(s)	74, 1198
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	2 cut(s)	370, 520
HincII	GTYRAC	4 cut(s)	48, 349, 700, 853
HindII	GTYRAC	4 cut(s)	48, 349, 700, 853
HinfI	GANTC	7 cut(s)	121, 485, 832, 1002, 1167, 1307, 1353
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	3 cut(s)	164, 369, 957
Hpy166II	GTNNAC	6 cut(s)	48, 349, 401, 700, 753, 853
Hpy188I	TCNGA	7 cut(s)	102, 120, 180, 237, 514, 820, 1335
Hpy188III	TCNNGA	8 cut(s)	340, 389, 413, 829, 1009, 1253, 1357, 1365
Hpy8I	GTNNAC	6 cut(s)	48, 349, 401, 700, 753, 853
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	5 cut(s)	319, 665, 1330, 1331, 1338
HpyCH4III	ACNGT	3 cut(s)	86, 398, 610
HpyCH4IV	ACGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 584, 662, 878, 941, 953
HpyF3I	CTNAG	8 cut(s)	57, 132, 146, 179, 210, 390, 1130, 1332
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	370, 520
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	1084, 1120
LmnI	GCTCC	3 cut(s)	563, 571, 1109
Lsp1109I	GCAGC	5 cut(s)	454, 692, 931, 1042, 1070
LweI	GCATC	2 cut(s)	931, 1155
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	6 cut(s)	205, 375, 526, 619, 760, 1114
MalI	GATC	2 cut(s)	1086, 1122
MboI	GATC	2 cut(s)	1084, 1120
MboII	GAAGA	6 cut(s)	224, 506, 885, 937, 1193, 1328
MflI	RGATCY	1 cut(s)	1120
MhlI	GDGCHC	2 cut(s)	71, 568
MluCI	AATT	5 cut(s)	241, 1096, 1155, 1258, 1276
MmeI	TCCRAC	1 cut(s)	1112
MroXI	GAANNNNTTC	1 cut(s)	1320
MseI	TTAA	7 cut(s)	63, 261, 348, 774, 950, 1100, 1266
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	6 cut(s)	195, 424, 449, 668, 837, 1205
Mva1269I	GAATGC	2 cut(s)	469, 889
MvaI	CCWGG	5 cut(s)	195, 424, 668, 837, 1205
MwoI	GCNNNNNNNGC	6 cut(s)	75, 584, 662, 878, 941, 953
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	2 cut(s)	1084, 1120
NlaIII	CATG	2 cut(s)	370, 520
NlaIV	GGNNCC	1 cut(s)	446
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	4 cut(s)	205, 375, 619, 1114
PaqCI	CACCTGC	1 cut(s)	569
PctI	GAATGC	2 cut(s)	469, 889
PdmI	GAANNNNTTC	1 cut(s)	1320
PfeI	GAWTC	7 cut(s)	121, 485, 832, 1002, 1167, 1307, 1353
PkrI	GCNGC	6 cut(s)	6, 469, 682, 946, 1057, 1060
PshAI	GACNNNNGTC	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	568
Psp6I	CCWGG	5 cut(s)	193, 422, 666, 835, 1203
PspGI	CCWGG	5 cut(s)	193, 422, 666, 835, 1203
PspN4I	GGNNCC	1 cut(s)	446
PstI	CTGCAG	2 cut(s)	742, 1060
PsuI	RGATCY	1 cut(s)	1120
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	568
SalI	GTCGAC	2 cut(s)	46, 851
SaqAI	TTAA	7 cut(s)	63, 261, 348, 774, 950, 1100, 1266
SatI	GCNGC	6 cut(s)	5, 468, 681, 945, 1056, 1059
Sau3AI	GATC	2 cut(s)	1084, 1120
ScrFI	CCNGG	6 cut(s)	195, 424, 449, 668, 837, 1205
SduI	GDGCHC	2 cut(s)	71, 568
SfaNI	GCATC	2 cut(s)	931, 1155
SfcI	CTRYAG	3 cut(s)	570, 738, 1056
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	5 cut(s)	241, 1096, 1155, 1258, 1276
SsiI	CCGC	1 cut(s)	561
SspI	AATATT	1 cut(s)	1104
SstI	GAGCTC	1 cut(s)	568
StyD4I	CCNGG	6 cut(s)	193, 422, 447, 666, 835, 1203
StyI	CCWWGG	1 cut(s)	1302
TaaI	ACNGT	3 cut(s)	86, 398, 610
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	6 cut(s)	47, 170, 488, 852, 1254, 1314
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	5 cut(s)	241, 1096, 1155, 1258, 1276
TfiI	GAWTC	7 cut(s)	121, 485, 832, 1002, 1167, 1307, 1353
Tru1I	TTAA	7 cut(s)	63, 261, 348, 774, 950, 1100, 1266
Tru9I	TTAA	7 cut(s)	63, 261, 348, 774, 950, 1100, 1266
TscAI	CASTG	6 cut(s)	91, 358, 562, 711, 1119, 1138
TseFI	GTSAC	4 cut(s)	205, 375, 619, 1114
TseI	GCWGC	6 cut(s)	4, 467, 680, 944, 1055, 1058
Tsp45I	GTSAC	4 cut(s)	205, 375, 619, 1114
TspDTI	ATGAA	3 cut(s)	338, 476, 885
TspRI	CASTG	6 cut(s)	91, 358, 562, 711, 1119, 1138
XapI	RAATTY	1 cut(s)	1096
XmiI	GTMKAC	3 cut(s)	47, 752, 852
XmnI	GAANNNNTTC	1 cut(s)	1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.