RchiOBHm_Chr7g0190991

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000552
Physical Location & Seq
Reverse (-)
9886628 .. 9889703
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17064

Sequence Viewer

Length: 447 bp
ATGTCGAAGCAGGGTGAGGTCGTATGCGTCACCGGTGGAAGCGGCTGCATCGGATCATGGGTTGTCTGCCTCCTCCTCGACCGCGGCTACACCGTCCACGCCACCGTCAAAGACCTTGGATTTCATCGTTCTCGAACTTCCGGCGAAGCCCCAGCACCACAGAAGCCGAAGAAAGAACCTACCGATGATGAAAAGAGAAGGATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGAACCAATGAAGCTACACGCCACATATGCCACTCCACTCTCAAAATTCTTCTTCTTGCAGAGGACGACGGTGAGATGAAGCATCTAGAAGCCCTAGAAGGAGCCCAAACGCGCCTCCGCCTCTTCCAGATCGACCTCCTCGACTACAATTCCATCTCCGCCGCAATCGAAGACTTTTATAAGTTTCACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

148

Amino Acids

16.31

Weight (kDa)

7.72

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccII CGCG 2 cut(s) 84, 364
AciI CCGC 6 cut(s) 42, 82, 84, 370, 411, 414
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 251
AgeI ACCGGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 222, 266
AluI AGCT 2 cut(s) 222, 266
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 297
AsiGI ACCGGT 1 cut(s) 32
AspLEI GCGC 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 22, 26, 335, 431
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 237
BfaI CTAG 2 cut(s) 338, 347
BisI GCNGC 4 cut(s) 43, 46, 85, 414
BlsI GCNGC 4 cut(s) 44, 47, 86, 415
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 256, 355
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 57, 343
BpiI GAAGAC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 82, 115
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 32
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 82, 115
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 251
BseRI GAGGAG 3 cut(s) 62, 65, 380
BseXI GCAGC 1 cut(s) 32
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 2 cut(s) 84, 364
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 3 cut(s) 33, 141, 216
BslI CCNNNNNNNGG 1 cut(s) 251
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 3 cut(s) 53, 237, 381
BspACI CCGC 6 cut(s) 42, 82, 84, 370, 411, 414
BspANI GGCC 1 cut(s) 215
BspFNI CGCG 2 cut(s) 84, 364
BspLI GGNNCC 2 cut(s) 256, 355
BspPI GGATC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 82, 115
BssMI GATC 3 cut(s) 53, 237, 381
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 94, 106, 323
Bst6I CTCTTC 1 cut(s) 380
BstDSI CCRYGG 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 2 cut(s) 84, 364
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 3 cut(s) 56, 240, 384
BstMBI GATC 3 cut(s) 53, 237, 381
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstUI CGCG 2 cut(s) 84, 364
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 32
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 1 cut(s) 57
CviJI RGCY 9 cut(s) 45, 87, 149, 166, 215, 222, 266, 344, 356
CviKI_1 RGCY 9 cut(s) 45, 87, 149, 166, 215, 222, 266, 344, 356
DpnI GATC 3 cut(s) 55, 239, 383
DpnII GATC 3 cut(s) 53, 237, 381
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 2 cut(s) 359, 400
Eco130I CCWWGG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 60
FaiI YATR 5 cut(s) 25, 58, 278, 280, 432
FatI CATG 1 cut(s) 56
FauNDI CATATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 43, 46, 85, 414
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 4 cut(s) 43, 46, 85, 414
FspBI CTAG 2 cut(s) 338, 347
GlaI GCGC 1 cut(s) 365
GluI GCNGC 4 cut(s) 43, 46, 85, 414
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 215
HapII CCGG 3 cut(s) 33, 141, 216
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 220
HpaII CCGG 3 cut(s) 33, 141, 216
HphI GGTGA 4 cut(s) 22, 26, 335, 431
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 53, 242
Hpy188III TCNNGA 3 cut(s) 132, 338, 379
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 192, 344
HpyCH4III ACNGT 3 cut(s) 94, 106, 323
HpyCH4V TGCA 2 cut(s) 48, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 237
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 3 cut(s) 53, 237, 381
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 7 cut(s) 46, 154, 165, 229, 231, 258, 392
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 57, 343
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 2 cut(s) 338, 347
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 55, 239, 383
MboI GATC 3 cut(s) 53, 237, 381
MboII GAAGA 5 cut(s) 181, 293, 296, 367, 434
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 2 cut(s) 297, 400
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 3 cut(s) 33, 141, 216
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 2 cut(s) 84, 364
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeI CATATG 1 cut(s) 278
NdeII GATC 3 cut(s) 53, 237, 381
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 2 cut(s) 256, 355
NmuCI GTSAC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 4 cut(s) 44, 47, 86, 415
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 256, 355
SacII CCGCGG 1 cut(s) 85
SatI GCNGC 4 cut(s) 43, 46, 85, 414
Sau3AI GATC 3 cut(s) 53, 237, 381
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 358
SetI ASST 7 cut(s) 21, 117, 181, 224, 247, 268, 390
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 2 cut(s) 57, 343
Sfr303I CCGCGG 1 cut(s) 85
SgrAI CRCCGGYG 1 cut(s) 32
SgrBI CCGCGG 1 cut(s) 85
Sse9I AATT 2 cut(s) 297, 400
SsiI CCGC 6 cut(s) 42, 82, 84, 370, 411, 414
SspMI CTAG 2 cut(s) 338, 347
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 94, 106, 323
TaqI TCGA 6 cut(s) 5, 78, 133, 384, 393, 420
TasI AATT 2 cut(s) 297, 400
TauI GCSGC 3 cut(s) 45, 87, 416
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 6 cut(s) 113, 204, 218, 242, 276, 344
TspRI CASTG 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 297
XbaI TCTAGA 1 cut(s) 337
XspI CTAG 2 cut(s) 338, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.