Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19070558 .. 19072596

Gene Structure 2039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG211600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATGTCAGAGTCAGAGGCTTCGCTTATGATTTTGGACATGATTGTGCTGGAACCTAATTACTATAGTGCCTTCCATGATGACATCACTGTGGCTAACCTTGTGAAAATTACTGTTGTGAATGACATCAAGAACTTCTCAGTTTATGGGGAAGACAAGGGCAAGAGGTGCTGCGTTAAATGCCATTCAATCACCTTTATTAGATGTTGGTATAGAGACTTAGAGAGGGCAACTGGAATTGTCTTGACACTCTATGAGGTAAATGCTGCAGCCGAGGTTATATATTATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAGGTTGGCATCACTCTAATTGCTTCTGGATTCAAACGCAAGAAGAAAGCACAAGGGGACATTACCCTTGGAATCAATCGAGGACCTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCTCAATTTCTTGAAGAAAGGACGCTCACGTTGTCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

170

Amino Acids

18.81

Weight (kDa)

8.25

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	78 - 128	6.1e-09	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	290, 326
AcsI	RAATTY	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	189, 382, 481
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	290, 326
ApeKI	GCWGC	3 cut(s)	171, 266, 269
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	158, 253, 281
BccI	CCATC	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	210
BfmI	CTRYAG	2 cut(s)	64, 267
BisI	GCNGC	3 cut(s)	172, 267, 270
BlsI	GCNGC	3 cut(s)	173, 268, 271
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	273, 415
Bse1I	ACTGG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	273, 415
BseMII	CTCAG	3 cut(s)	153, 355, 459
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	158, 253, 281
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	295, 331
BspCNI	CTCAG	3 cut(s)	152, 354, 458
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	2 cut(s)	290, 326
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	273, 415
BssMI	GATC	2 cut(s)	295, 331
BssT1I	CCWWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	91, 115
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	139, 220, 341, 445
BstKTI	GATC	2 cut(s)	298, 334
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	295, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 180
BstSFI	CTRYAG	2 cut(s)	64, 267
BstV1I	GCAGC	3 cut(s)	158, 253, 281
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	87, 330, 349
Cfr13I	GGNCC	1 cut(s)	431
CseI	GACGC	1 cut(s)	498
CviAII	CATG	2 cut(s)	40, 77
CviJI	RGCY	3 cut(s)	20, 95, 272
CviKI_1	RGCY	3 cut(s)	20, 95, 272
DdeI	CTNAG	4 cut(s)	139, 220, 341, 445
DpnI	GATC	2 cut(s)	297, 333
DpnII	GATC	2 cut(s)	295, 331
DraIII	CACNNNGTG	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	43, 80
FaiI	YATR	9 cut(s)	29, 41, 66, 78, 147, 213, 255, 281, 283
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	39, 76
Fnu4HI	GCNGC	3 cut(s)	172, 267, 270
Fsp4HI	GCNGC	3 cut(s)	172, 267, 270
GluI	GCNGC	3 cut(s)	172, 267, 270
HgaI	GACGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	43, 80
HinfI	GANTC	4 cut(s)	11, 378, 420, 466
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	10, 16, 448
Hpy188III	TCNNGA	4 cut(s)	130, 244, 375, 478
HpyAV	CCTTC	4 cut(s)	82, 443, 444, 451
HpyCH4III	ACNGT	2 cut(s)	91, 115
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 180
HpyF3I	CTNAG	4 cut(s)	139, 220, 341, 445
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	2 cut(s)	43, 80
Kzo9I	GATC	2 cut(s)	295, 331
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	4 cut(s)	35, 219, 335, 360
Lsp1109I	GCAGC	3 cut(s)	158, 253, 281
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	297, 333
MboI	GATC	2 cut(s)	295, 331
MboII	GAAGA	3 cut(s)	164, 403, 493
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	6 cut(s)	58, 108, 237, 307, 366, 472
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	10, 159, 219, 250, 268, 422, 448
MseI	TTAA	2 cut(s)	177, 311
MslI	CAYNNNNRTG	2 cut(s)	44, 89
MwoI	GCNNNNNNNGC	2 cut(s)	168, 180
NdeII	GATC	2 cut(s)	295, 331
NlaIII	CATG	2 cut(s)	43, 80
NlaIV	GGNNCC	1 cut(s)	54
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	378, 420, 466
PkrI	GCNGC	3 cut(s)	173, 268, 271
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	431
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	44, 89
SaqAI	TTAA	2 cut(s)	177, 311
SatI	GCNGC	3 cut(s)	172, 267, 270
Sau3AI	GATC	2 cut(s)	295, 331
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	20
SetI	ASST	9 cut(s)	58, 102, 170, 197, 261, 279, 354, 436, 499
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	64, 267
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	44, 89
Sse9I	AATT	6 cut(s)	58, 108, 237, 307, 366, 472
SspI	AATATT	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	91, 115
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	427
TasI	AATT	6 cut(s)	58, 108, 237, 307, 366, 472
TfiI	GAWTC	3 cut(s)	378, 420, 466
Tru1I	TTAA	2 cut(s)	177, 311
Tru9I	TTAA	2 cut(s)	177, 311
TscAI	CASTG	3 cut(s)	94, 330, 349
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	171, 266, 269
Tsp45I	GTSAC	1 cut(s)	325
TspRI	CASTG	3 cut(s)	94, 330, 349
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.