Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

18898065 .. 18902338

Gene Structure 4274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGTGATTCAACACCTGAAGATGGTGATCAGGTCATATATCATTGCATTGTTAGAACATTGGATGGAGTTATTGTTGAATCTTCAAGATCAGAATTTAGTGCCTTCTATTACGGCGAGAGTGCTGTTCGTTTAGTAATGGGGAAGCTGGTTTGGTTGAGTTGGGGAATTGGAGCTATAAAGCAACAGAATGAGTCAGCTTGGGATGAACTCAAGCATACTAGGCAAGCCATTGGATCCCTGAAACCCAAAAACACAGTTGACGAAATGAGCCACGACCTGTGCCCAGGTAAGATCTACGTGATTGCTGCTAAGAAGTCTTCAGGGAAGGTGGTGACTACGAAAAGAACAAAATTCAGCGGCTTCAACACATTCTCGAACAGACATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0000413 GO:0000902 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006457 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006807 GO:0007163 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009880 GO:0009987 GO:0010033 GO:0010154 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019752 GO:0022414 GO:0022622 GO:0030010 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042761 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0061077 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0090696 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_6 TPR_8

Protein Analysis

146

Amino Acids

16.02

Weight (kDa)

9.42

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	2 cut(s)	279, 292
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	143, 401
AcuI	CTGAAG	2 cut(s)	87, 354
AfiI	CCNNNNNNNGG	2 cut(s)	50, 71
AgsI	TTSAA	4 cut(s)	60, 128, 135, 415
AjnI	CCWGG	2 cut(s)	43, 334
AluBI	AGCT	4 cut(s)	21, 196, 224, 248
AluI	AGCT	4 cut(s)	21, 196, 224, 248
AlwI	GGATC	2 cut(s)	279, 292
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	2 cut(s)	143, 401
AsuHPI	GGTGA	3 cut(s)	65, 86, 394
BaeGI	GKGCMC	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	2 cut(s)	65, 107
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	45, 336
BclI	TGATCA	2 cut(s)	36, 76
BfaI	CTAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	2 cut(s)	357, 409
BlsI	GCNGC	2 cut(s)	358, 410
Bme1390I	CCNGG	2 cut(s)	45, 336
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	45, 336
BpiI	GAAGAC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 71
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	45, 336
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	118, 259
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	50, 71
BseMI	GCAATG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	50, 71
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	36, 76, 137, 284, 342
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	279, 292
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	5 cut(s)	36, 76, 137, 284, 342
Bst2UI	CCWGG	2 cut(s)	45, 336
Bst4CI	ACNGT	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	118, 259
BstKTI	GATC	5 cut(s)	39, 79, 140, 287, 345
BstMBI	GATC	5 cut(s)	36, 76, 137, 284, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	2 cut(s)	45, 336
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	43, 334
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	284, 342
BstYI	RGATCY	2 cut(s)	284, 342
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	118, 259
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	276
CsiI	ACCWGGT	1 cut(s)	43
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	8 cut(s)	14, 21, 196, 224, 248, 278, 321, 411
CviKI_1	RGCY	8 cut(s)	14, 21, 196, 224, 248, 278, 321, 411
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	5 cut(s)	38, 78, 139, 286, 344
DpnII	GATC	5 cut(s)	36, 76, 137, 284, 342
EaeI	YGGCCR	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	87, 354
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	43, 334
FaeI	CATG	1 cut(s)	437
FaiI	YATR	5 cut(s)	86, 88, 227, 267, 435
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	2 cut(s)	36, 76
Fnu4HI	GCNGC	2 cut(s)	357, 409
FokI	GGATG	2 cut(s)	125, 266
Fsp4HI	GCNGC	2 cut(s)	357, 409
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	357, 409
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	3 cut(s)	56, 128, 242
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	3 cut(s)	65, 86, 394
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	41, 142
Hpy188III	TCNNGA	2 cut(s)	135, 424
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	163, 370
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	437
Ksp22I	TGATCA	2 cut(s)	36, 76
Kzo9I	GATC	5 cut(s)	36, 76, 137, 284, 342
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	1 cut(s)	343
MabI	ACCWGGT	1 cut(s)	43
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	5 cut(s)	38, 78, 139, 286, 344
MboI	GATC	5 cut(s)	36, 76, 137, 284, 342
MboII	GAAGA	3 cut(s)	80, 123, 360
MflI	RGATCY	2 cut(s)	284, 342
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	3 cut(s)	143, 216, 401
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	45, 336
MvaI	CCWGG	2 cut(s)	45, 336
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	5 cut(s)	36, 76, 137, 284, 342
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	56, 128
PkrI	GCNGC	2 cut(s)	358, 410
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	43, 334
PspGI	CCWGG	2 cut(s)	43, 334
PspN4I	GGNNCC	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	284, 342
SatI	GCNGC	2 cut(s)	357, 409
Sau3AI	GATC	5 cut(s)	36, 76, 137, 284, 342
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	45, 336
SduI	GDGCHC	1 cut(s)	335
SexAI	ACCWGGT	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	143, 216, 401
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	43, 334
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	143, 216, 401
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	56, 128
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	3 cut(s)	17, 41, 270
TspRI	CASTG	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	2 cut(s)	143, 401
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.