Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

18987511 .. 18994349

Gene Structure 6839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACTTATGATCAAAGTCATGATTGTTACCACATCTTCAATGGAATAACTGTTTTTTTTCCCCCTTCCTCTTTGGGAATAGGGAAGACAAGGGAAAGAGATGCTGCGTTAAATGCCATTCAATCACCTTTATTTGATATTGGTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTATATGAGGTAAATGCAGCAGCTGAGGTTATTTATGATCTTATTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGTTCAAGTTAGCATCACTCTAATTACTTCTGGATTCAAACACCAAGAAGAAAGTGATGGGAGGCCAATCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACGTTCCTCCTTCTCAGAAGGCAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACACTCACGTTATCCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

161

Amino Acids

17.65

Weight (kDa)

5.28

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	28 - 111	1.2e-21	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	239, 275
AcsI	RAATTY	1 cut(s)	256
AdeI	CACNNNGTG	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	40, 122, 299, 331, 451
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	239, 275
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	104, 215, 218
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	92, 406
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	91, 227, 230
BccI	CCATC	2 cut(s)	292, 344
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	369
BisI	GCNGC	3 cut(s)	105, 216, 219
BlsI	GCNGC	3 cut(s)	106, 217, 220
Bme1390I	CCNGG	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	91, 315
BpiI	GAAGAC	2 cut(s)	92, 406
Bpu10I	CCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	385, 476
Bse1I	ACTGG	2 cut(s)	163, 184
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	385, 476
BseMII	CTCAG	3 cut(s)	213, 304, 429
BseNI	ACTGG	2 cut(s)	163, 184
BseXI	GCAGC	3 cut(s)	91, 227, 230
BshFI	GGCC	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	10, 235, 244, 280
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	3 cut(s)	214, 303, 428
BspHI	TCATGA	1 cut(s)	19
BspPI	GGATC	2 cut(s)	239, 275
BsrI	ACTGG	2 cut(s)	163, 184
BssECI	CCNNGG	2 cut(s)	385, 476
BssMI	GATC	4 cut(s)	10, 235, 244, 280
BssT1I	CCWWGG	2 cut(s)	385, 476
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	222, 290, 415
BstKTI	GATC	4 cut(s)	13, 238, 247, 283
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	10, 235, 244, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	91, 227, 230
BstV2I	GAAGAC	2 cut(s)	92, 406
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 298
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	19
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	3 cut(s)	155, 221, 358
CviKI_1	RGCY	3 cut(s)	155, 221, 358
DdeI	CTNAG	3 cut(s)	222, 290, 415
DpnI	GATC	4 cut(s)	12, 237, 246, 282
DpnII	GATC	4 cut(s)	10, 235, 244, 280
DraIII	CACNNNGTG	1 cut(s)	293
Eco130I	CCWWGG	2 cut(s)	385, 476
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	385, 476
ErhI	CCWWGG	2 cut(s)	385, 476
FaeI	CATG	1 cut(s)	23
FaiI	YATR	7 cut(s)	9, 21, 146, 176, 202, 204, 234
FatI	CATG	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	105, 216, 219
Fsp4HI	GCNGC	3 cut(s)	105, 216, 219
GluI	GCNGC	3 cut(s)	105, 216, 219
HaeIII	GGCC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	3 cut(s)	327, 390, 436
HphI	GGTGA	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	5 cut(s)	20, 169, 324, 440, 448
HpyAV	CCTTC	3 cut(s)	75, 413, 421
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	403, 469
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	222, 290, 415
HpySE526I	ACGT	2 cut(s)	403, 469
Hsp92II	CATG	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 235, 244, 280
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	7 cut(s)	144, 154, 165, 309, 350, 377, 453
Lsp1109I	GCAGC	3 cut(s)	91, 227, 230
LweI	GCATC	2 cut(s)	91, 315
MaeII	ACGT	2 cut(s)	403, 469
MaeIII	GTNAC	2 cut(s)	26, 274
MalI	GATC	4 cut(s)	12, 237, 246, 282
MboI	GATC	4 cut(s)	10, 235, 244, 280
MboII	GAAGA	6 cut(s)	28, 97, 353, 411, 463, 466
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	3 cut(s)	162, 256, 315
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	6 cut(s)	79, 144, 199, 217, 348, 418
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	2 cut(s)	110, 260
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	4 cut(s)	10, 235, 244, 280
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	327, 390, 436
PkrI	GCNGC	3 cut(s)	106, 217, 220
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	110, 260
SatI	GCNGC	3 cut(s)	105, 216, 219
Sau3AI	GATC	4 cut(s)	10, 235, 244, 280
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	6 cut(s)	130, 210, 223, 228, 406, 472
SfaNI	GCATC	2 cut(s)	91, 315
Sse9I	AATT	3 cut(s)	162, 256, 315
SspI	AATATT	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	2 cut(s)	385, 476
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	406, 472
TaqI	TCGA	1 cut(s)	397
TasI	AATT	3 cut(s)	162, 256, 315
TfiI	GAWTC	3 cut(s)	327, 390, 436
Tru1I	TTAA	2 cut(s)	110, 260
Tru9I	TTAA	2 cut(s)	110, 260
TscAI	CASTG	2 cut(s)	279, 298
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	104, 215, 218
Tsp45I	GTSAC	1 cut(s)	274
TspRI	CASTG	2 cut(s)	279, 298
XapI	RAATTY	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.