RLG00000024012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000552
Physical Location & Seq
Reverse (-)
30875053 .. 30879860
4808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024012

Sequence Viewer

Length: 492 bp
ATGGAGTCTCATGGCAAGTCACTGAAGGTATATGCACCATACATAATTTTAATAGTCATTGCTGGGAAGGTGGAGTCTAGGTTGTGCTCTCAGTGGACGGTTACCCCCGCTCCCAATGAGTTCGATTCATTGGCTCATAATAAGGTGGCTCTATCAGAAGGTCAAGGGAATGGATTCTTTCATGAAAGTGACTCTGATCTTGGAGCATTCCCCCAAAAGAATGGAATGGGCCATCTCAAATTGAAAGAAGTCGCTTACTTAGTATTGTATCATTCTCCTGCTTGCTCAGTCTTTGAGCCGAGGAACAAGAACATAGTTCAGCGGCTTCAACGCATTCTCGAAAAGCACTACAAAATGGTTGAAATGAAACTTCAGGCTCAACAAAAGGAAAGTATTCTTGCAGGTGAGGATATGCATTCTGTTACAATTGTGAGAGTACAAGTTGTCACTTGTACAGCTACCTGTGGAAGCTGTCATAAGATGCACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

8.58

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis pycom12g02340 pycom14g02140
rosa_chinensis RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 2 cut(s) 108, 322
AcuI CTGAAG 2 cut(s) 44, 356
AfaI GTAC 2 cut(s) 438, 454
AgsI TTSAA 3 cut(s) 244, 329, 362
AluBI AGCT 2 cut(s) 458, 471
AluI AGCT 2 cut(s) 458, 471
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 1 cut(s) 229
Asp700I GAANNNNTTC 2 cut(s) 173, 393
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 4 cut(s) 65, 94, 95, 124
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 104, 300
BseYI CCCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 12
BsmI GAATGC 3 cut(s) 206, 333, 415
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 452
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 108, 322
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 103, 299
BspHI TCATGA 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 90, 259, 286
BstEII GGTNACC 1 cut(s) 100
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 196
BstPI GGTNACC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 221
BsuRI GGCC 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 20, 98
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 437, 453
CviAII CATG 2 cut(s) 11, 182
CviJI RGCY 8 cut(s) 134, 149, 231, 298, 325, 377, 458, 471
CviKI_1 RGCY 8 cut(s) 134, 149, 231, 298, 325, 377, 458, 471
CviQI GTAC 2 cut(s) 437, 453
DdeI CTNAG 3 cut(s) 90, 259, 286
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 44, 356
Eco91I GGTNACC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 417
FaeI CATG 2 cut(s) 14, 185
FatI CATG 2 cut(s) 10, 181
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 323
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 2 cut(s) 14, 185
HinfI GANTC 5 cut(s) 5, 74, 125, 174, 191
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 157, 196
Hpy188III TCNNGA 2 cut(s) 182, 338
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 3 cut(s) 19, 61, 152
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 35, 401, 415, 484
HpyF3I CTNAG 3 cut(s) 90, 259, 286
Hsp92II CATG 2 cut(s) 14, 185
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 2 cut(s) 115, 203
LpnPI CCDG 5 cut(s) 48, 291, 359, 387, 475
LweI GCATC 1 cut(s) 471
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 5 cut(s) 18, 100, 188, 421, 445
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 110
MboI GATC 1 cut(s) 196
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 3 cut(s) 45, 239, 426
MlyI GAGTC 3 cut(s) 14, 83, 185
MnlI CCTC 2 cut(s) 294, 400
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 2 cut(s) 173, 393
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 322
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 3 cut(s) 206, 333, 415
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 14, 185
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 3 cut(s) 18, 188, 445
NsiI ATGCAT 1 cut(s) 417
PagI TCATGA 1 cut(s) 181
PaqCI CACCTGC 1 cut(s) 392
PctI GAATGC 3 cut(s) 206, 333, 415
PdmI GAANNNNTTC 2 cut(s) 173, 393
PfeI GAWTC 2 cut(s) 125, 174
PkrI GCNGC 1 cut(s) 324
PleI GAGTC 3 cut(s) 13, 82, 185
PpsI GAGTC 3 cut(s) 13, 82, 185
PspEI GGTNACC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 229
RsaI GTAC 2 cut(s) 438, 454
RsaNI GTAC 2 cut(s) 437, 453
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 3 cut(s) 14, 83, 185
SduI GDGCHC 1 cut(s) 89
SetI ASST 9 cut(s) 30, 72, 83, 147, 163, 406, 460, 464, 473
SfaNI GCATC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 45, 239, 426
SsiI CCGC 2 cut(s) 108, 322
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 123, 339
TasI AATT 3 cut(s) 45, 239, 426
TatI WGTACW 2 cut(s) 436, 452
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 2 cut(s) 125, 174
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 2 cut(s) 27, 98
TseFI GTSAC 3 cut(s) 18, 188, 445
Tsp45I GTSAC 3 cut(s) 18, 188, 445
TspDTI ATGAA 4 cut(s) 117, 170, 198, 380
TspRI CASTG 2 cut(s) 27, 98
XmnI GAANNNNTTC 2 cut(s) 173, 393
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.