Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000552

Physical Location & Seq

Genomic Coordinates Forward (+)

19217058 .. 19226342

Gene Structure 9285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTGGATAGGAATTAGCAAGTCCAATATTATCATCAACAATTCAAGTTTATGGGTTAAGGGGAATCAAGATATCAAATTGGCTCATATAATTGAAAAGTCAGAGACTTCACTTATGATTTTGGACATGATTGTGCTGGAACCTAATTACCATAGTGCCTTCCATGATGGCATCACTGGGGCTAACCTTGTGAAAATTACTGTTGTGAATGACATCAAGAACTTCTCAGTTTATGGGGTAAATGCTGCAGCCGAGGTTGTATATGATCTTGCTGATTCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCCGTGGTCAAGTTAGCATCACTCTAATTGCTTCTGGATTGAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCGCAAGGAGACATTACCCTTGGAATCAGTCAAAGACTTTCCTCCTTCTCAGAAGGCAGTTCAGTCGAGATTCCCGATTTCTTGATGAAGAAAGGACGCTCACGTTATCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031976 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034357 GO:0035639 GO:0036094 GO:0042651 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

171

Amino Acids

18.65

Weight (kDa)

5.89

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	62 - 121	2.5e-07	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36250 AT2G36250 AT2G36250 AT2G36250 AT3G52750 AT3G52750 AT3G52750 AT3G52750
fragaria_vesca	FvH4_6g18610 FvH4_6g18610 FvH4_6g18610 FvH4_6g18610
malus_domestica	MD12G1035600.v1.1 MD14G1022400.v1.1
prunus_persica	Prupe.7G110900_v2.0.a1 Prupe.7G110900_v2.0.a1
pyrus_communis	pycom12g02340 pycom14g02140
rosa_chinensis	RchiOBHm_Chr3g0473191 RchiOBHm_Chr3g0473221 RchiOBHm_Chr3g0473231 RchiOBHm_Chr3g0473301 RchiOBHm_Chr3g0473311 RchiOBHm_Chr3g0473351 RchiOBHm_Chr3g0473401 RchiOBHm_Chr3g0473491 RchiOBHm_Chr3g0473541 RchiOBHm_Chr5g0044451 RchiOBHm_Chr7g0190991
rosa_laevigata	RLG00000019977 RLG00000024009 RLG00000024012 RLG00000024015 RLG00000024018 RLG00000024019 RLG00000024021 RLG00000030788
rosa_multiflora	Rmu_sc0000327.1_g000039 Rmu_sc0002075.1_g000002 Rmu_sc0003069.1_g000018 Rmu_sc0003069.1_g000050 Rmu_sc0003069.1_g000058 Rmu_sc0006792.1_g000029 Rmu_sc0011598.1_g000001 Rmu_sc0016164.1_g000018
rosa_roxburghii	Rroxscaffold_2G00102410 Rroxscaffold_2G00102420 Rroxscaffold_4G00324300 Rroxscaffold_6G00408060 Rroxscaffold_6G00408100 Rroxscaffold_6G00408130 Rroxscaffold_6G00408200 Rroxscaffold_6G00408220 Rroxscaffold_6G00408230
rosa_rugosa	Rorug03G0132100 Rorug03G0132500 Rorug03G0132600 Rorug03G0132900 Rorug05G0214500 Rorug06G0144900
rosa_samantha	Rh3AG183800 Rh3AG184500 Rh3BG210300 Rh3BG210500 Rh3BG210800 Rh3BG211200 Rh3BG211600 Rh3BG211800 Rh3BG212000 Rh3BG212200 Rh3BG212400 Rh3BG212500 Rh3CG207400 Rh3CG207500 Rh3CG207700 Rh3CG209100 Rh3DG207400 Rh3DG208500 Rh5BG305900 Rh5DG315200
rosa_wichuraiana	Rw0G008130 Rw0G008180 Rw0G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	286
AdeI	CACNNNGTG	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	45, 95, 279, 361
AjnI	CCWGG	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	98, 399
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	245, 248
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	232, 260
BccI	CCATC	3 cut(s)	161, 322, 374
BcgI	CGANNNNNNTGC	2 cut(s)	442, 476
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	98, 399
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	246, 249
BlsI	GCNGC	2 cut(s)	247, 250
Bme1390I	CCNGG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	180, 345
BmuI	ACTGGG	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	252, 322, 415
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	252, 322, 415
BseMII	CTCAG	2 cut(s)	240, 459
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	232, 260
BshFI	GGCC	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	98, 399
BsnI	GGCC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	265, 310
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	239, 458
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	252, 322, 415
BssMI	GATC	2 cut(s)	265, 310
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	226, 445
BstDSI	CCRYGG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	2 cut(s)	268, 313
BstMAI	GTCTC	2 cut(s)	98, 399
BstMBI	GATC	2 cut(s)	265, 310
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	232, 260
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	174, 309
CfoI	GCGC	1 cut(s)	400
CseI	GACGC	1 cut(s)	501
CviAII	CATG	2 cut(s)	127, 164
CviJI	RGCY	4 cut(s)	83, 182, 251, 388
CviKI_1	RGCY	4 cut(s)	83, 182, 251, 388
DdeI	CTNAG	2 cut(s)	226, 445
DpnI	GATC	2 cut(s)	267, 312
DpnII	GATC	2 cut(s)	265, 310
DraIII	CACNNNGTG	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	393
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	130, 167
FatI	CATG	2 cut(s)	126, 163
Fnu4HI	GCNGC	2 cut(s)	246, 249
Fsp4HI	GCNGC	2 cut(s)	246, 249
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	2 cut(s)	246, 249
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	388
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	130, 167
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	4 cut(s)	64, 275, 420, 466
Hpy188I	TCNGA	2 cut(s)	103, 448
Hpy188III	TCNNGA	6 cut(s)	68, 217, 354, 463, 470, 478
HpyAV	CCTTC	3 cut(s)	169, 443, 451
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	226, 445
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	130, 167
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	265, 310
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	5 cut(s)	122, 162, 339, 380, 407
Lsp1109I	GCAGC	2 cut(s)	232, 260
LweI	GCATC	2 cut(s)	180, 345
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	267, 312
MboI	GATC	2 cut(s)	265, 310
MboII	GAAGA	2 cut(s)	383, 496
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	8 cut(s)	12, 40, 77, 90, 145, 195, 286, 345
MnlI	CCTC	3 cut(s)	247, 378, 448
MseI	TTAA	2 cut(s)	57, 290
MslI	CAYNNNNRTG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	265, 310
NlaIII	CATG	2 cut(s)	130, 167
NlaIV	GGNNCC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	64, 275, 420, 466
PkrI	GCNGC	2 cut(s)	247, 250
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	57, 290
SatI	GCNGC	2 cut(s)	246, 249
Sau3AI	GATC	2 cut(s)	265, 310
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	4 cut(s)	145, 189, 258, 502
SfaNI	GCATC	2 cut(s)	180, 345
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	8 cut(s)	12, 40, 77, 90, 145, 195, 286, 345
SspI	AATATT	2 cut(s)	28, 294
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	462
TasI	AATT	8 cut(s)	12, 40, 77, 90, 145, 195, 286, 345
TfiI	GAWTC	4 cut(s)	64, 275, 420, 466
Tru1I	TTAA	2 cut(s)	57, 290
Tru9I	TTAA	2 cut(s)	57, 290
TscAI	CASTG	2 cut(s)	181, 309
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	245, 248
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	181, 309
XapI	RAATTY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.