Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

16680505 .. 16681261

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAGGGAGAAACTTGTGTCATTTGTCTGGAAGAAACCAAGGCCGATCGCATGTTCGTAATGGATAAATGTCTTCACCGTCATTGCTATCCTTGTGTTAATCAGTTAGTAGAAGTGAAACTGCGAAACGGAACTGTGCCTACATGTCTTGACTATGAATGCAAGTTAAAACTAAGTCTTGAAAACTGTTTCAAGGTTTTGAAACCTAAGGTGATTGAGCTATGGAAACACATGATGAAAGAAGAGTCCATTCCTTTAGCAAAGAGAATCTATTGCCCATATATAAACTGTTCAACATTGATGTCCAAAACCGAGATTTCTCGGTCTAATAAATCCAATGACCGTGCATGTATCAAATGTTCTGGACTCGTTTGCATTGATTGTAAAGTACCATGGCATTCTGATTTATCGTGTGCTGAGTACAAGAAACTTCACCCTGACCCTGTACTTGATGACTTGACGCTAAAGCTTCTAGCAAACGATCAAAAATGGCGCCAATGTGTCAAGTGTCGACACTTGATTGAGCTTAACCAAGGGTGCAACCACATGACTTGCAGATGTGGGTATCAATTTTGCTACAAATGTGGAGTTGAATGGAAGAAGGGTCAAGTGACTTGTCCTACTGGTTGTCCACGTACTGGCCAAGGTTATTTTTATGATGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

222

Amino Acids

25.64

Weight (kDa)

8.6

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	80 - 138	8.8e-10	IBR domain, a half RING-finger domain
IBR	PF01485	155 - 206	2.4e-11	IBR domain, a half RING-finger domain
IBR_1	PF22191	165 - 203	3.2e-08	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	640
AcyI	GRCGYC	1 cut(s)	493
AfaI	GTAC	4 cut(s)	390, 422, 447, 637
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	182, 193, 202, 294, 593
AluBI	AGCT	3 cut(s)	220, 469, 526
AluI	AGCT	3 cut(s)	220, 469, 526
AoxI	GGCC	2 cut(s)	42, 640
AspLEI	GCGC	1 cut(s)	495
AsuHPI	GGTGA	3 cut(s)	68, 223, 425
AxyI	CCTNAGG	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	642
BanI	GGYRCC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	65
BccI	CCATC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	493
BsaJI	CCNNGG	4 cut(s)	39, 392, 532, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	628, 643
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	4 cut(s)	39, 392, 532, 643
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	628, 643
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	44, 642
BshNI	GGYRCC	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmI	GAATGC	2 cut(s)	164, 397
BsnI	GGCC	2 cut(s)	44, 642
Bsp143I	GATC	2 cut(s)	46, 481
Bsp19I	CCATGG	1 cut(s)	392
BspANI	GGCC	2 cut(s)	44, 642
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	628, 643
BssECI	CCNNGG	4 cut(s)	39, 392, 532, 643
BssMI	GATC	2 cut(s)	46, 481
BssNI	GRCGYC	1 cut(s)	493
BssT1I	CCWWGG	4 cut(s)	39, 392, 532, 643
Bst4CI	ACNGT	5 cut(s)	80, 136, 188, 290, 344
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	635
BstDEI	CTNAG	3 cut(s)	173, 207, 417
BstDSI	CCRYGG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	49, 484
BstMBI	GATC	2 cut(s)	46, 481
BstMCI	CGRYCG	1 cut(s)	49
BstNSI	RCATGY	3 cut(s)	55, 147, 351
BstV2I	GAAGAC	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	44, 642
BtgI	CCRYGG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	495
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	4 cut(s)	389, 421, 446, 636
CspCI	CAANNNNNGTGG	2 cut(s)	533, 568
CviAII	CATG	6 cut(s)	52, 144, 232, 348, 393, 547
CviJI	RGCY	5 cut(s)	44, 220, 469, 526, 642
CviKI_1	RGCY	5 cut(s)	44, 220, 469, 526, 642
CviQI	GTAC	4 cut(s)	389, 421, 446, 636
DdeI	CTNAG	3 cut(s)	173, 207, 417
DinI	GGCGCC	1 cut(s)	494
DpnI	GATC	2 cut(s)	48, 483
DpnII	GATC	2 cut(s)	46, 481
EaeI	YGGCCR	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	4 cut(s)	39, 392, 532, 643
Eco81I	CCTNAGG	1 cut(s)	207
EcoT14I	CCWWGG	4 cut(s)	39, 392, 532, 643
EgeI	GGCGCC	1 cut(s)	494
EheI	GGCGCC	1 cut(s)	494
ErhI	CCWWGG	4 cut(s)	39, 392, 532, 643
FaeI	CATG	6 cut(s)	55, 147, 235, 351, 396, 550
FatI	CATG	6 cut(s)	51, 143, 231, 347, 392, 546
FblI	GTMKAC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	44, 642
HgaI	GACGC	1 cut(s)	469
HhaI	GCGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	493
Hin1II	CATG	6 cut(s)	55, 147, 235, 351, 396, 550
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	3 cut(s)	245, 267, 366
HphI	GGTGA	3 cut(s)	68, 223, 425
Hpy166II	GTNNAC	2 cut(s)	512, 632
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	4 cut(s)	29, 149, 179, 363
Hpy8I	GTNNAC	2 cut(s)	512, 632
HpyAV	CCTTC	1 cut(s)	595
HpyCH4III	ACNGT	5 cut(s)	80, 136, 188, 290, 344
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	5 cut(s)	162, 347, 375, 540, 555
HpyF3I	CTNAG	3 cut(s)	173, 207, 417
HpySE526I	ACGT	1 cut(s)	634
Hsp92I	GRCGYC	1 cut(s)	493
Hsp92II	CATG	6 cut(s)	55, 147, 235, 351, 396, 550
HspAI	GCGC	1 cut(s)	493
KasI	GGCGCC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	46, 481
LpnPI	CCDG	6 cut(s)	14, 348, 450, 456, 609, 624
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	48, 483
MboI	GATC	2 cut(s)	46, 481
MboII	GAAGA	4 cut(s)	44, 65, 254, 610
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	1 cut(s)	569
MluNI	TGGCCA	1 cut(s)	642
Mly113I	GGCGCC	1 cut(s)	493
MlyI	GAGTC	2 cut(s)	254, 360
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	3 cut(s)	99, 167, 528
Msp20I	TGGCCA	1 cut(s)	642
Mva1269I	GAATGC	2 cut(s)	164, 397
NarI	GGCGCC	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	2 cut(s)	46, 481
NlaIII	CATG	6 cut(s)	55, 147, 235, 351, 396, 550
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	3 cut(s)	55, 147, 351
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	2 cut(s)	164, 397
PfeI	GAWTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	638
Ple19I	CGATCG	1 cut(s)	49
PleI	GAGTC	2 cut(s)	253, 360
PluTI	GGCGCC	1 cut(s)	496
PpsI	GAGTC	2 cut(s)	253, 360
Ppu21I	YACGTR	1 cut(s)	635
PscI	ACATGT	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	494
PsrI	GAACNNNNNNTAC	4 cut(s)	124, 156, 343, 375
PvuI	CGATCG	1 cut(s)	49
RsaI	GTAC	4 cut(s)	390, 422, 447, 637
RsaNI	GTAC	4 cut(s)	389, 421, 446, 636
SalI	GTCGAC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	99, 167, 528
Sau3AI	GATC	2 cut(s)	46, 481
SchI	GAGTC	2 cut(s)	254, 360
SetI	ASST	8 cut(s)	198, 208, 213, 222, 471, 528, 637, 649
SfoI	GGCGCC	1 cut(s)	494
Sse9I	AATT	1 cut(s)	569
SspDI	GGCGCC	1 cut(s)	492
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	4 cut(s)	39, 392, 532, 643
TaaI	ACNGT	5 cut(s)	80, 136, 188, 290, 344
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	1 cut(s)	511
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	569
TatI	WGTACW	2 cut(s)	420, 445
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	3 cut(s)	99, 167, 528
Tru9I	TTAA	3 cut(s)	99, 167, 528
TseFI	GTSAC	1 cut(s)	610
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	17, 171, 251
TspGWI	ACGGA	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	638
XceI	RCATGY	3 cut(s)	55, 147, 351
XmiI	GTMKAC	1 cut(s)	511
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.