Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

66102152 .. 66105437

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGAAACCCCAACGGACCAAACCGACGTCCACGTCATCCTCTCGGAGCAGCGCAGGGAGCTCTTGGCGGCCAAAACCCTAGACGCCGACCTCGACTTGGCCTTCAATCTCCAAATGCAAGAAGCCATGACCGCCTCTCTGGCGCTCAATCCATCGCCGAGTACTTCGCAGTCTCCTCCTCCGTCGCAGCCGTACGAGCCAAACGACGACGTGTTGGACATCGCCGCCACGCTGCTGCTGGAGGACGTGGAGAGGTTCTCGCAGGAGTACGAGGACCACGAGCGCAGCGTTTTGGAGGCGAGGAAGGCGAAGGAGGATCTGGACCGTCGGATTCACGACCACAAGTTCGCGATCGACGTCAGTGACTTGCCGGAGGAATACTGGAGGAATCACGGGGACGTGTACGAACGGCCGTTCTGTACAGATGGGGCGTCGTCGTCGTCGTCGGGAAAAGCTGCGGCGGAGACAGAGTGTTTGAGATTGTACTGCAAGGGTTTGATTAGTGAAGAGTTGGTGAAGAATGTGAAAATGGCGGTGGGTGGAATTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGGTTTTCGAGGTGAAGAAGAATATGGAGGCGGTGGTTGAGGGTGAGAGACTGAGCGATGAGGCTGCGGAGCTTGAGGCTCTGGTTGAAGGGCTTAATAAAGCTCTTACTATGGACTTGAAGAATGTCACATTTTTCTGTGATGATAACAAGCTTTACCAATATTTTACAAACAGAGTGGTTCCTGGAAACAGCAAAATTGCAACACTAGTCAACCAAGTTGCTCTTCTACAAAAAGAATTTGAATCCTGCAGCCCTTCACTTGTGGCACGTGGTGATATTAAGTTTGCATTTAAATTTGCAAGAGAGGCTATAGTTTCCCAGATCACCTGGCAAGCAGAAACAAGCAATGGCAAGTGTTTGAAGGAGACTTGTGTCATATGTTATGAAGAAACTGATGTTGCTCGAATGTTTTCAATCGATGGTTGTCTGCACAGGTATTGCATTTCTTGTATGAAACAGCACGTGGAAGTAAGGTTGCTTAATGGGATGGTGGCGCATTGTCCTCATGAAGGCTGCAAATCCGAAGTGAATATTGATAGCTATGAGAATTTCTTCTTGGCACCTAAACTAGTTGAGGTTATGAACCAACGAATCAAGGAGTCTTCTATTCATGTTACAGACAGAGTCTATTGCCAATATCCCAAGTGTTCTGCATTAATGTCCAAGAAGGAGATCTTAGAATATACCAAAACTTCTTATGTTGGTGCTGAGGAATCTGGAGCCAGAAAATGCATGAAATGCCACTACTATTTTTGTATCAAGTGCTTGGTTCCTTGGCATTTTGAATTGACCTGTGATGAGTACCAAACGTCACACAATTTCCCTAAAGAACATCAAATGCTGAAGTCACTGGCTACAAAGAGACTCTGGCGGCAGTGTGTTAAGTGCAACCACATGGTTGAACTTGCACAAGGTTGTTACCACATTACTTGCAGATGTGGATATCAGTTTTGCTACACTTGTGGAGCTGAATGGAAGGACAAGAAACCTTGTTCCTGCCCACTCTGGGACGAGCAGCACATACTTGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

537

Amino Acids

61.11

Weight (kDa)

5.39

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	177 - 296	6.7e-20	Reverse transcriptase-like
IBR	PF01485	397 - 458	4.3e-09	IBR domain, a half RING-finger domain
IBR	PF01485	474 - 524	7.5e-07	IBR domain, a half RING-finger domain
Rcat_RNF216	PF26200	475 - 519	6.9e-06	RNF216 Rcat domain
IBR_1	PF22191	485 - 522	8.9e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	2 cut(s)	30, 360
AccB1I	GGYRCC	1 cut(s)	1138
AccII	CGCG	1 cut(s)	350
AciI	CCGC	9 cut(s)	68, 132, 225, 458, 461, 533, 608, 644, 1450
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	69, 410
AcsI	RAATTY	3 cut(s)	815, 872, 1126
AcuI	CTGAAG	1 cut(s)	1442
AcvI	CACGTG	2 cut(s)	848, 1042
AcyI	GRCGYC	4 cut(s)	27, 84, 357, 431
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	7 cut(s)	163, 194, 269, 404, 421, 485, 1382
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1088, 1585
AflIII	ACRYGT	2 cut(s)	210, 399
AgsI	TTSAA	8 cut(s)	106, 665, 697, 821, 940, 993, 1364, 1481
AhlI	ACTAGT	2 cut(s)	784, 1147
AjiI	CACGTC	4 cut(s)	34, 211, 247, 400
AjnI	CCWGG	2 cut(s)	760, 905
AjuI	GAANNNNNNNTTGG	4 cut(s)	786, 818, 1118, 1150
AluBI	AGCT	7 cut(s)	61, 455, 649, 680, 730, 1119, 1547
AluI	AGCT	7 cut(s)	61, 455, 649, 680, 730, 1119, 1547
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	177, 458, 619, 938, 1435
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	69, 99, 410
ApoI	RAATTY	3 cut(s)	815, 872, 1126
ArsI	GACNNNNNNTTYG	4 cut(s)	329, 361, 457, 489
AseI	ATTAAT	1 cut(s)	1235
Asp700I	GAANNNNTTC	2 cut(s)	988, 1130
AspLEI	GCGC	4 cut(s)	54, 145, 285, 1075
AspS9I	GGNCC	3 cut(s)	16, 274, 322
AsuHPI	GGTGA	5 cut(s)	526, 601, 632, 863, 895
AvaII	GGWCC	3 cut(s)	16, 274, 322
BanI	GGYRCC	1 cut(s)	1138
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	278
BbrPI	CACGTG	2 cut(s)	848, 1042
BbsI	GAAGAC	1 cut(s)	1173
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	1287
BccI	CCATC	4 cut(s)	160, 419, 992, 1060
BceAI	ACGGC	3 cut(s)	175, 397, 425
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	2 cut(s)	762, 907
BcoDI	GTCTC	5 cut(s)	177, 458, 619, 938, 1435
BcuI	ACTAGT	2 cut(s)	784, 1147
BfaI	CTAG	4 cut(s)	80, 567, 785, 1148
BfmI	CTRYAG	2 cut(s)	826, 888
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	1251
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	762, 907
Bme18I	GGWCC	3 cut(s)	16, 274, 322
BmgBI	CACGTC	4 cut(s)	34, 211, 247, 400
BmgT120I	GGNCC	3 cut(s)	16, 274, 322
BmiI	GGNNCC	4 cut(s)	759, 1140, 1300, 1350
BmrFI	CCNGG	2 cut(s)	762, 907
BoxI	GACNNNNGTC	1 cut(s)	950
BpiI	GAAGAC	1 cut(s)	1173
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	3 cut(s)	260, 403, 1317
Bpu10I	CCTNAGC	1 cut(s)	1287
BpuEI	CTTGAG	1 cut(s)	671
Bsa29I	ATCGAT	1 cut(s)	996
BsaAI	YACGTR	2 cut(s)	848, 1042
BsaHI	GRCGYC	4 cut(s)	27, 84, 357, 431
BsaJI	CCNNGG	1 cut(s)	1352
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1088, 1585
Bse1I	ACTGG	2 cut(s)	386, 1434
Bse3DI	GCAATG	1 cut(s)	931
BseBI	CCWGG	2 cut(s)	762, 907
BseCI	ATCGAT	1 cut(s)	996
BseDI	CCNNGG	1 cut(s)	1352
BseGI	GGATG	2 cut(s)	36, 1071
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1088, 1585
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	2 cut(s)	620, 1278
BseNI	ACTGG	2 cut(s)	386, 1434
BseRI	GAGGAG	2 cut(s)	165, 168
BseX3I	CGGCCG	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	992
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	2 cut(s)	354, 413
BshFI	GGCC	3 cut(s)	71, 101, 412
BshNI	GGYRCC	1 cut(s)	1138
BshVI	ATCGAT	1 cut(s)	996
BsiEI	CGRYCG	2 cut(s)	354, 413
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	371
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	410, 1601
BslI	CCNNNNNNNGG	3 cut(s)	97, 1088, 1585
BsmAI	GTCTC	5 cut(s)	177, 458, 619, 938, 1435
BsmFI	GGGAC	2 cut(s)	410, 1601
BsnI	GGCC	3 cut(s)	71, 101, 412
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	419
Bsp143I	GATC	4 cut(s)	316, 351, 900, 1251
Bsp68I	TCGCGA	1 cut(s)	350
BspACI	CCGC	9 cut(s)	68, 132, 225, 458, 461, 533, 608, 644, 1450
BspANI	GGCC	3 cut(s)	71, 101, 412
BspCNI	CTCAG	2 cut(s)	621, 1279
BspDI	ATCGAT	1 cut(s)	996
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	1084
BspLI	GGNNCC	4 cut(s)	759, 1140, 1300, 1350
BspMAI	CTGCAG	1 cut(s)	830
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	1138
BsrDI	GCAATG	1 cut(s)	931
BsrGI	TGTACA	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	386, 1434
BssECI	CCNNGG	1 cut(s)	1352
BssMI	GATC	4 cut(s)	316, 351, 900, 1251
BssNI	GRCGYC	4 cut(s)	27, 84, 357, 431
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	1352
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	2 cut(s)	762, 907
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	501, 807
BstACI	GRCGYC	4 cut(s)	27, 84, 357, 431
BstAPI	GCANNNNNTGC	1 cut(s)	1317
BstAUI	TGTACA	1 cut(s)	419
BstBAI	YACGTR	2 cut(s)	848, 1042
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	3 cut(s)	629, 1255, 1287
BstENI	CCTNNNNNAGG	1 cut(s)	1086
BstF5I	GGATG	2 cut(s)	36, 1071
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	54, 145, 285, 1075
BstKTI	GATC	4 cut(s)	319, 354, 903, 1254
BstMAI	GTCTC	5 cut(s)	177, 458, 619, 938, 1435
BstMBI	GATC	4 cut(s)	316, 351, 900, 1251
BstMCI	CGRYCG	2 cut(s)	354, 413
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 884, 1317
BstNI	CCWGG	2 cut(s)	762, 907
BstPAI	GACNNNNGTC	1 cut(s)	950
BstSCI	CCNGG	2 cut(s)	760, 905
BstSFI	CTRYAG	2 cut(s)	826, 888
BstUI	CGCG	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	1173
BstX2I	RGATCY	2 cut(s)	316, 1251
BstYI	RGATCY	2 cut(s)	316, 1251
BstZI	CGGCCG	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	996
BsuRI	GGCC	3 cut(s)	71, 101, 412
BsuTUI	ATCGAT	1 cut(s)	996
BtgZI	GCGATG	3 cut(s)	138, 205, 648
BtrI	CACGTC	4 cut(s)	34, 211, 247, 400
BtsCI	GGATG	2 cut(s)	36, 1071
BtsI	GCAGTG	1 cut(s)	1460
BtsIMutI	CAGTG	3 cut(s)	367, 1427, 1460
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	912
CciI	TCATGA	1 cut(s)	1084
CfoI	GCGC	4 cut(s)	54, 145, 285, 1075
Cfr13I	GGNCC	3 cut(s)	16, 274, 322
ClaI	ATCGAT	1 cut(s)	996
CseI	GACGC	2 cut(s)	92, 420
Csp6I	GTAC	7 cut(s)	162, 193, 268, 403, 420, 484, 1381
CspCI	CAANNNNNGTGG	4 cut(s)	735, 770, 1490, 1525
CviAII	CATG	5 cut(s)	127, 1085, 1190, 1312, 1474
CviQI	GTAC	7 cut(s)	162, 193, 268, 403, 420, 484, 1381
DdeI	CTNAG	3 cut(s)	629, 1255, 1287
DpnI	GATC	4 cut(s)	318, 353, 902, 1253
DpnII	GATC	4 cut(s)	316, 351, 900, 1251
DraI	TTTAAA	1 cut(s)	871
DraIII	CACNNNGTG	1 cut(s)	851
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	69, 410
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	501, 807
EarI	CTCTTC	2 cut(s)	501, 807
EciI	GGCGGA	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	1352
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	1523
Eco47I	GGWCC	3 cut(s)	16, 274, 322
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	1442
Eco72I	CACGTG	2 cut(s)	848, 1042
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1086
EcoRII	CCWGG	2 cut(s)	760, 905
EcoRV	GATATC	1 cut(s)	1523
EcoT14I	CCWWGG	1 cut(s)	1352
EcoT22I	ATGCAT	1 cut(s)	1313
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	1352
FaeI	CATG	5 cut(s)	130, 1088, 1193, 1315, 1477
FalI	AAGNNNNNCTT	4 cut(s)	786, 818, 1238, 1270
FaqI	GGGAC	2 cut(s)	410, 1601
FatI	CATG	5 cut(s)	126, 1084, 1189, 1311, 1473
FauNDI	CATATG	1 cut(s)	956
FokI	GGATG	2 cut(s)	23, 1078
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	4 cut(s)	80, 567, 785, 1148
GlaI	GCGC	4 cut(s)	53, 144, 284, 1074
GsuI	CTGGAG	3 cut(s)	260, 403, 1317
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	71, 101, 412
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	92, 420
HhaI	GCGC	4 cut(s)	54, 145, 285, 1075
Hin1I	GRCGYC	4 cut(s)	27, 84, 357, 431
Hin1II	CATG	5 cut(s)	130, 1088, 1193, 1315, 1477
Hin6I	GCGC	4 cut(s)	52, 143, 283, 1073
HinP1I	GCGC	4 cut(s)	52, 143, 283, 1073
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	8 cut(s)	331, 388, 821, 1170, 1178, 1203, 1292, 1443
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	5 cut(s)	526, 601, 632, 863, 895
Hpy166II	GTNNAC	3 cut(s)	31, 403, 790
Hpy188I	TCNGA	3 cut(s)	46, 330, 1102
Hpy188III	TCNNGA	6 cut(s)	320, 335, 349, 447, 1085, 1296
Hpy8I	GTNNAC	3 cut(s)	31, 403, 790
HpyAV	CCTTC	9 cut(s)	112, 298, 304, 659, 843, 934, 1082, 1240, 1549
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 847, 1041, 1388
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 884, 1317
HpyF3I	CTNAG	3 cut(s)	629, 1255, 1287
HpySE526I	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 847, 1041, 1388
Hsp92I	GRCGYC	4 cut(s)	27, 84, 357, 431
Hsp92II	CATG	5 cut(s)	130, 1088, 1193, 1315, 1477
HspAI	GCGC	4 cut(s)	52, 143, 283, 1073
Kzo9I	GATC	4 cut(s)	316, 351, 900, 1251
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	5 cut(s)	46, 58, 646, 1298, 1544
MaeI	CTAG	4 cut(s)	80, 567, 785, 1148
MaeII	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 847, 1041, 1388
MaeIII	GTNAC	7 cut(s)	362, 560, 703, 1192, 1389, 1425, 1496
MalI	GATC	4 cut(s)	318, 353, 902, 1253
MboI	GATC	4 cut(s)	316, 351, 900, 1251
MboII	GAAGA	9 cut(s)	518, 529, 604, 607, 709, 794, 977, 1123, 1173
MflI	RGATCY	2 cut(s)	316, 1251
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	7 cut(s)	543, 774, 815, 872, 1126, 1364, 1396
MlyI	GAGTC	3 cut(s)	1187, 1212, 1437
MmeI	TCCRAC	2 cut(s)	195, 308
Mph1103I	ATGCAT	1 cut(s)	1313
MroXI	GAANNNNTTC	2 cut(s)	988, 1130
MseI	TTAA	6 cut(s)	672, 858, 870, 1059, 1235, 1461
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	762, 907
MvaI	CCWGG	2 cut(s)	762, 907
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 884, 1317
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	4 cut(s)	316, 351, 900, 1251
NlaIII	CATG	5 cut(s)	130, 1088, 1193, 1315, 1477
NlaIV	GGNNCC	4 cut(s)	759, 1140, 1300, 1350
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	5 cut(s)	362, 560, 703, 1389, 1425
NruI	TCGCGA	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	1313
PagI	TCATGA	1 cut(s)	1084
PciSI	GCTCTTC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	6 cut(s)	90, 201, 276, 285, 354, 440
PdmI	GAANNNNTTC	2 cut(s)	988, 1130
PfeI	GAWTC	5 cut(s)	331, 388, 821, 1170, 1292
Pfl23II	CGTACG	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	1202
PfoI	TCCNGGA	1 cut(s)	760
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	3 cut(s)	1186, 1211, 1437
PmaCI	CACGTG	2 cut(s)	848, 1042
PmlI	CACGTG	2 cut(s)	848, 1042
PpsI	GAGTC	3 cut(s)	1186, 1211, 1437
Ppu21I	YACGTR	2 cut(s)	848, 1042
PshAI	GACNNNNGTC	1 cut(s)	950
PshBI	ATTAAT	1 cut(s)	1235
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	760, 905
PspCI	CACGTG	2 cut(s)	848, 1042
PspGI	CCWGG	2 cut(s)	760, 905
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	759, 1140, 1300, 1350
PspPI	GGNCC	3 cut(s)	16, 274, 322
PstI	CTGCAG	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	316, 1251
PsyI	GACNNNGTC	1 cut(s)	1202
PvuI	CGATCG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	7 cut(s)	163, 194, 269, 404, 421, 485, 1382
RsaNI	GTAC	7 cut(s)	162, 193, 268, 403, 420, 484, 1381
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	6 cut(s)	672, 858, 870, 1059, 1235, 1461
Sau3AI	GATC	4 cut(s)	316, 351, 900, 1251
Sau96I	GGNCC	3 cut(s)	16, 274, 322
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	3 cut(s)	1187, 1212, 1437
ScrFI	CCNGG	2 cut(s)	762, 907
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	826, 888
SinI	GGWCC	3 cut(s)	16, 274, 322
SmiI	ATTTAAAT	1 cut(s)	871
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SpeI	ACTAGT	2 cut(s)	784, 1147
Sse9I	AATT	7 cut(s)	543, 774, 815, 872, 1126, 1364, 1396
SsiI	CCGC	9 cut(s)	68, 132, 225, 458, 461, 533, 608, 644, 1450
SspI	AATATT	2 cut(s)	740, 1111
SspMI	CTAG	4 cut(s)	80, 567, 785, 1148
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	760, 905
StyI	CCWWGG	1 cut(s)	1352
SwaI	ATTTAAAT	1 cut(s)	871
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	9 cut(s)	30, 36, 213, 249, 360, 402, 850, 1044, 1391
TaqI	TCGA	5 cut(s)	93, 354, 585, 982, 996
TasI	AATT	7 cut(s)	543, 774, 815, 872, 1126, 1364, 1396
TatI	WGTACW	3 cut(s)	161, 419, 483
TauI	GCSGC	4 cut(s)	71, 227, 461, 1453
TfiI	GAWTC	5 cut(s)	331, 388, 821, 1170, 1292
Tru1I	TTAA	6 cut(s)	672, 858, 870, 1059, 1235, 1461
Tru9I	TTAA	6 cut(s)	672, 858, 870, 1059, 1235, 1461
TscAI	CASTG	3 cut(s)	367, 1434, 1460
TseFI	GTSAC	5 cut(s)	362, 560, 703, 1389, 1425
Tsp45I	GTSAC	5 cut(s)	362, 560, 703, 1389, 1425
TspDTI	ATGAA	6 cut(s)	978, 1046, 1101, 1175, 1178, 1328
TspGWI	ACGGA	2 cut(s)	29, 171
TspRI	CASTG	3 cut(s)	367, 1434, 1460
Tth111I	GACNNNGTC	1 cut(s)	1202
VpaK11BI	GGWCC	3 cut(s)	16, 274, 322
VspI	ATTAAT	1 cut(s)	1235
XagI	CCTNNNNNAGG	1 cut(s)	1086
XapI	RAATTY	3 cut(s)	815, 872, 1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	2 cut(s)	988, 1130
XspI	CTAG	4 cut(s)	80, 567, 785, 1148
ZraI	GACGTC	2 cut(s)	28, 358
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.