Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000420.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

205524 .. 208566

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000420.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

atggaaaccccaacggagcaaaccgacgtccacgtcatcctctcggagcagcgcagggagctcttggcggccaaaaccctagacgccgacttcgacttggccttcaatctccaaatgcaagaagccatgaccgcctctctggcgctcaatccatcaccgagtacttcgcagtctcctcctccgtcgctgcggtacgagccaaacgacgacgtgttggacatcgccaccacgctgctgctggaggacgtggagaggttctcgcaggagtacgaggaccacgagcgcagcgttttggaggcgaggaagtcgaaggaggacctggaccggcggattcacgaccacaagttcgcgatcgacgtcagtgacttgccggaggaatactggaggaatcatggggacttgtacgaacggccgttctgtacggatggggcgtcgtcgtcgtcgggaaaagctgcggcggagacagagtgtttgagattgtactgcaagggtttgattagtgaagagttggtgaagaatgtgaaaatggcggtgggtggaattggggttgcgatttgtgaccctagagataatctggttttcgaggtgaagaagaatatggaggcggtggttgagggtgagagactgagcgatgaggctgcggagcttgaggctctggttgaagggcttaataaagctcttactatggacttgaagaatgtcacatttttctgtgatgatagcaagctttaccaatatgtgagtcttagcataaagtactcatttgattattcgttactatttaagggagtggttcctggaaacagcaaaattgcaacactagtcaaccaagttgctcttctacaaaaagaatttgaatcctgcagcccttcacttgtggcacgtggtgatattaagtttgcatttaaatttgcaagagaggctatagtttcccagatcacctggcaagcagaaacaagcaatggcaagtgtttgaaggagacttgtgtcatatgttatgaagaaactgatgttgctcgaatgttttcaatcgatggttgtctgcacaggtattgcatttcttgtatgaaacagcacgtggaagtaaggttgcttaatgggatggtggcacattgtcctcatgaaggctgcaaatccgaagtgaatattgatagctatgagaatttcttcttggcacctaaaatagttgaggttatgaaccaacgaatcaaggagtcttctattcatgttacagacagagtctattgccaatatcccaagtgttctgcattaatgtccaagaaggagatcttagaatataccaaaacttcttatgttggtgcggaggaatctggagccagaaaatgcatgaaatgccactactatttttgtatcaagtgcttggttccttggcattttgaattgacctgtgatgagtaccaaacgtcacacaatttccctaaagaacatcaaatgctgaagtcactggctacaaagagactctggcggcagggtgttaagtgcaaccacatggttgaacttgcacatgatgtggatatcagttttgctacacttgtggagctgaatggaaggacaagaaaccttgttcctgcgcactctgggacgagcagtacatacttgcaacacaataagcggcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

547

Amino Acids

62.12

Weight (kDa)

5.53

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	2 cut(s)	30, 360
Acc16I	TGCGCA	1 cut(s)	1593
AccB1I	GGYRCC	1 cut(s)	1174
AccII	CGCG	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	69, 410
AcsI	RAATTY	3 cut(s)	851, 908, 1162
AcuI	CTGAAG	1 cut(s)	1478
AcvI	CACGTG	2 cut(s)	884, 1078
AcyI	GRCGYC	4 cut(s)	27, 84, 357, 431
AdeI	CACNNNGTG	1 cut(s)	887
AfaI	GTAC	9 cut(s)	163, 194, 269, 404, 421, 482, 758, 1418, 1612
AfiI	CCNNNNNNNGG	1 cut(s)	1124
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	9 cut(s)	106, 662, 694, 857, 976, 1029, 1400, 1517, 1640
AhlI	ACTAGT	1 cut(s)	820
AjiI	CACGTC	3 cut(s)	34, 211, 247
AjnI	CCWGG	3 cut(s)	318, 796, 941
AjuI	GAANNNNNNNTTGG	4 cut(s)	822, 854, 1154, 1186
AluBI	AGCT	7 cut(s)	61, 452, 646, 677, 727, 1155, 1561
AluI	AGCT	7 cut(s)	61, 452, 646, 677, 727, 1155, 1561
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	177, 455, 616, 974, 1471
AoxI	GGCC	3 cut(s)	69, 99, 410
ApeKI	GCWGC	9 cut(s)	49, 187, 232, 235, 285, 452, 638, 864, 1128
ApoI	RAATTY	3 cut(s)	851, 908, 1162
ArsI	GACNNNNNNTTYG	6 cut(s)	74, 106, 329, 361, 454, 486
AseI	ATTAAT	1 cut(s)	1271
Asp700I	GAANNNNTTC	2 cut(s)	1024, 1166
AspLEI	GCGC	4 cut(s)	54, 145, 285, 1594
AspS9I	GGNCC	3 cut(s)	274, 316, 322
AsuHPI	GGTGA	6 cut(s)	147, 523, 598, 629, 899, 931
AvaII	GGWCC	3 cut(s)	274, 316, 322
BanI	GGYRCC	1 cut(s)	1174
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	278
BbrPI	CACGTG	2 cut(s)	884, 1078
BbsI	GAAGAC	1 cut(s)	1209
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	9 cut(s)	61, 174, 219, 222, 297, 439, 625, 876, 1115
BccI	CCATC	4 cut(s)	160, 419, 1028, 1096
BceAI	ACGGC	2 cut(s)	397, 425
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	3 cut(s)	320, 798, 943
BcoDI	GTCTC	5 cut(s)	177, 455, 616, 974, 1471
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	3 cut(s)	80, 564, 821
BfmI	CTRYAG	2 cut(s)	862, 924
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	1287
BmcAI	AGTACT	2 cut(s)	163, 758
Bme1390I	CCNGG	3 cut(s)	320, 798, 943
Bme18I	GGWCC	3 cut(s)	274, 316, 322
BmgBI	CACGTC	3 cut(s)	34, 211, 247
BmgT120I	GGNCC	3 cut(s)	274, 316, 322
BmiI	GGNNCC	4 cut(s)	795, 1176, 1336, 1386
BmrFI	CCNGG	3 cut(s)	320, 798, 943
BoxI	GACNNNNGTC	1 cut(s)	986
BpiI	GAAGAC	1 cut(s)	1209
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	3 cut(s)	260, 403, 1353
BpuEI	CTTGAG	1 cut(s)	668
Bsa29I	ATCGAT	1 cut(s)	1032
BsaAI	YACGTR	2 cut(s)	884, 1078
BsaHI	GRCGYC	4 cut(s)	27, 84, 357, 431
BsaJI	CCNNGG	1 cut(s)	1388
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	1124
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	2 cut(s)	386, 1470
Bse3DI	GCAATG	1 cut(s)	967
BseBI	CCWGG	3 cut(s)	320, 798, 943
BseCI	ATCGAT	1 cut(s)	1032
BseDI	CCNNGG	1 cut(s)	1388
BseGI	GGATG	3 cut(s)	36, 430, 1107
BseLI	CCNNNNNNNGG	1 cut(s)	1124
BseMI	GCAATG	1 cut(s)	967
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	2 cut(s)	386, 1470
BseRI	GAGGAG	2 cut(s)	165, 168
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	9 cut(s)	61, 174, 219, 222, 297, 439, 625, 876, 1115
BsgI	GTGCAG	1 cut(s)	1028
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	2 cut(s)	354, 413
BshFI	GGCC	3 cut(s)	71, 101, 412
BshNI	GGYRCC	1 cut(s)	1174
BshVI	ATCGAT	1 cut(s)	1032
BsiEI	CGRYCG	2 cut(s)	354, 413
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	325, 371
BslFI	GGGAC	2 cut(s)	410, 1615
BslI	CCNNNNNNNGG	1 cut(s)	1124
BsmAI	GTCTC	5 cut(s)	177, 455, 616, 974, 1471
BsmFI	GGGAC	2 cut(s)	410, 1615
BsnI	GGCC	3 cut(s)	71, 101, 412
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	351, 936, 1287
Bsp68I	TCGCGA	1 cut(s)	350
BspANI	GGCC	3 cut(s)	71, 101, 412
BspCNI	CTCAG	1 cut(s)	618
BspDI	ATCGAT	1 cut(s)	1032
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	1120
BspLI	GGNNCC	4 cut(s)	795, 1176, 1336, 1386
BspMAI	CTGCAG	1 cut(s)	866
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	1174
BsrDI	GCAATG	1 cut(s)	967
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	386, 1470
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	1388
BssMI	GATC	3 cut(s)	351, 936, 1287
BssNI	GRCGYC	4 cut(s)	27, 84, 357, 431
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	1388
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	3 cut(s)	320, 798, 943
Bst6I	CTCTTC	2 cut(s)	498, 843
BstACI	GRCGYC	4 cut(s)	27, 84, 357, 431
BstAPI	GCANNNNNTGC	1 cut(s)	1353
BstBAI	YACGTR	2 cut(s)	884, 1078
BstC8I	GCNNGC	2 cut(s)	725, 948
BstDEI	CTNAG	3 cut(s)	626, 746, 1291
BstENI	CCTNNNNNAGG	1 cut(s)	1122
BstF5I	GGATG	3 cut(s)	36, 430, 1107
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	54, 145, 285, 1594
BstKTI	GATC	3 cut(s)	354, 939, 1290
BstMAI	GTCTC	5 cut(s)	177, 455, 616, 974, 1471
BstMBI	GATC	3 cut(s)	351, 936, 1287
BstMCI	CGRYCG	2 cut(s)	354, 413
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 131, 140, 196, 920, 1353
BstNI	CCWGG	3 cut(s)	320, 798, 943
BstPAI	GACNNNNGTC	1 cut(s)	986
BstSCI	CCNGG	3 cut(s)	318, 796, 941
BstSFI	CTRYAG	2 cut(s)	862, 924
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	9 cut(s)	61, 174, 219, 222, 297, 439, 625, 876, 1115
BstV2I	GAAGAC	1 cut(s)	1209
BstX2I	RGATCY	1 cut(s)	1287
BstYI	RGATCY	1 cut(s)	1287
BstZI	CGGCCG	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	1032
BsuRI	GGCC	3 cut(s)	71, 101, 412
BsuTUI	ATCGAT	1 cut(s)	1032
BtgZI	GCGATG	2 cut(s)	205, 645
BtrI	CACGTC	3 cut(s)	34, 211, 247
BtsCI	GGATG	3 cut(s)	36, 430, 1107
BtsIMutI	CAGTG	2 cut(s)	367, 1463
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	725, 948
CciI	TCATGA	1 cut(s)	1120
CfoI	GCGC	4 cut(s)	54, 145, 285, 1594
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	274, 316, 322
ClaI	ATCGAT	1 cut(s)	1032
CseI	GACGC	2 cut(s)	92, 420
Csp6I	GTAC	9 cut(s)	162, 193, 268, 403, 420, 481, 757, 1417, 1611
CviAII	CATG	7 cut(s)	127, 392, 1121, 1226, 1348, 1510, 1526
CviQI	GTAC	9 cut(s)	162, 193, 268, 403, 420, 481, 757, 1417, 1611
DdeI	CTNAG	3 cut(s)	626, 746, 1291
DpnI	GATC	3 cut(s)	353, 938, 1289
DpnII	GATC	3 cut(s)	351, 936, 1287
DraI	TTTAAA	1 cut(s)	907
DraIII	CACNNNGTG	1 cut(s)	887
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	69, 410
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	498, 843
EarI	CTCTTC	2 cut(s)	498, 843
EciI	GGCGGA	2 cut(s)	343, 473
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	1388
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	1537
Eco47I	GGWCC	3 cut(s)	274, 316, 322
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	1478
Eco72I	CACGTG	2 cut(s)	884, 1078
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1122
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	318, 796, 941
EcoRV	GATATC	1 cut(s)	1537
EcoT14I	CCWWGG	1 cut(s)	1388
EcoT22I	ATGCAT	1 cut(s)	1349
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	1388
FaeI	CATG	7 cut(s)	130, 395, 1124, 1229, 1351, 1513, 1529
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 1274, 1306
FaqI	GGGAC	2 cut(s)	410, 1615
FatI	CATG	7 cut(s)	126, 391, 1120, 1225, 1347, 1509, 1525
FauNDI	CATATG	1 cut(s)	992
FokI	GGATG	3 cut(s)	23, 437, 1114
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	3 cut(s)	80, 564, 821
FspI	TGCGCA	1 cut(s)	1593
GlaI	GCGC	4 cut(s)	53, 144, 284, 1593
GsuI	CTGGAG	3 cut(s)	260, 403, 1353
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	71, 101, 412
HapII	CCGG	2 cut(s)	325, 371
HgaI	GACGC	2 cut(s)	92, 420
HhaI	GCGC	4 cut(s)	54, 145, 285, 1594
Hin1I	GRCGYC	4 cut(s)	27, 84, 357, 431
Hin1II	CATG	7 cut(s)	130, 395, 1124, 1229, 1351, 1513, 1529
Hin6I	GCGC	4 cut(s)	52, 143, 283, 1592
HinP1I	GCGC	4 cut(s)	52, 143, 283, 1592
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	9 cut(s)	331, 388, 742, 857, 1206, 1214, 1239, 1328, 1479
HpaII	CCGG	2 cut(s)	325, 371
HphI	GGTGA	6 cut(s)	147, 523, 598, 629, 899, 931
Hpy166II	GTNNAC	2 cut(s)	31, 826
Hpy188I	TCNGA	2 cut(s)	46, 1138
Hpy188III	TCNNGA	5 cut(s)	335, 349, 444, 1121, 1332
Hpy8I	GTNNAC	2 cut(s)	31, 826
Hpy99I	CGWCG	9 cut(s)	29, 187, 209, 212, 359, 436, 439, 442, 445
HpyAV	CCTTC	8 cut(s)	112, 304, 656, 879, 970, 1118, 1276, 1563
HpyCH4IV	ACGT	8 cut(s)	27, 33, 210, 246, 357, 883, 1077, 1424
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 131, 140, 196, 920, 1353
HpyF3I	CTNAG	3 cut(s)	626, 746, 1291
HpySE526I	ACGT	8 cut(s)	27, 33, 210, 246, 357, 883, 1077, 1424
Hsp92I	GRCGYC	4 cut(s)	27, 84, 357, 431
Hsp92II	CATG	7 cut(s)	130, 395, 1124, 1229, 1351, 1513, 1529
HspAI	GCGC	4 cut(s)	52, 143, 283, 1592
Kzo9I	GATC	3 cut(s)	351, 936, 1287
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	6 cut(s)	16, 46, 58, 643, 1334, 1558
Lsp1109I	GCAGC	9 cut(s)	61, 174, 219, 222, 297, 439, 625, 876, 1115
MaeI	CTAG	3 cut(s)	80, 564, 821
MaeII	ACGT	8 cut(s)	27, 33, 210, 246, 357, 883, 1077, 1424
MaeIII	GTNAC	7 cut(s)	362, 557, 700, 774, 1228, 1425, 1461
MalI	GATC	3 cut(s)	353, 938, 1289
MboI	GATC	3 cut(s)	351, 936, 1287
MboII	GAAGA	9 cut(s)	515, 526, 601, 604, 706, 830, 1013, 1159, 1209
MflI	RGATCY	1 cut(s)	1287
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	7 cut(s)	540, 810, 851, 908, 1162, 1400, 1432
MlyI	GAGTC	4 cut(s)	751, 1223, 1248, 1473
MmeI	TCCRAC	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	1349
MroXI	GAANNNNTTC	2 cut(s)	1024, 1166
MseI	TTAA	7 cut(s)	669, 783, 894, 906, 1095, 1271, 1497
MspI	CCGG	2 cut(s)	325, 371
MspR9I	CCNGG	3 cut(s)	320, 798, 943
MvaI	CCWGG	3 cut(s)	320, 798, 943
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	6 cut(s)	58, 131, 140, 196, 920, 1353
NdeI	CATATG	1 cut(s)	992
NdeII	GATC	3 cut(s)	351, 936, 1287
NlaIII	CATG	7 cut(s)	130, 395, 1124, 1229, 1351, 1513, 1529
NlaIV	GGNNCC	4 cut(s)	795, 1176, 1336, 1386
NmuCI	GTSAC	5 cut(s)	362, 557, 700, 1425, 1461
NruI	TCGCGA	1 cut(s)	350
NsbI	TGCGCA	1 cut(s)	1593
NsiI	ATGCAT	1 cut(s)	1349
PagI	TCATGA	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	6 cut(s)	90, 201, 276, 285, 354, 428
PdmI	GAANNNNTTC	2 cut(s)	1024, 1166
PfeI	GAWTC	5 cut(s)	331, 388, 857, 1206, 1328
PflFI	GACNNNGTC	1 cut(s)	1238
PfoI	TCCNGGA	1 cut(s)	796
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	4 cut(s)	750, 1222, 1247, 1473
PmaCI	CACGTG	2 cut(s)	884, 1078
PmlI	CACGTG	2 cut(s)	884, 1078
PpsI	GAGTC	4 cut(s)	750, 1222, 1247, 1473
Ppu21I	YACGTR	2 cut(s)	884, 1078
PpuMI	RGGWCCY	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	986
PshBI	ATTAAT	1 cut(s)	1271
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	3 cut(s)	318, 796, 941
PspCI	CACGTG	2 cut(s)	884, 1078
PspGI	CCWGG	3 cut(s)	318, 796, 941
PspN4I	GGNNCC	4 cut(s)	795, 1176, 1336, 1386
PspPI	GGNCC	3 cut(s)	274, 316, 322
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	1287
PsyI	GACNNNGTC	1 cut(s)	1238
PvuI	CGATCG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	9 cut(s)	163, 194, 269, 404, 421, 482, 758, 1418, 1612
RsaNI	GTAC	9 cut(s)	162, 193, 268, 403, 420, 481, 757, 1417, 1611
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	7 cut(s)	669, 783, 894, 906, 1095, 1271, 1497
Sau3AI	GATC	3 cut(s)	351, 936, 1287
Sau96I	GGNCC	3 cut(s)	274, 316, 322
ScaI	AGTACT	2 cut(s)	163, 758
SchI	GAGTC	4 cut(s)	751, 1223, 1248, 1473
ScrFI	CCNGG	3 cut(s)	320, 798, 943
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	862, 924
SinI	GGWCC	3 cut(s)	274, 316, 322
SmiI	ATTTAAAT	1 cut(s)	907
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
SpeI	ACTAGT	1 cut(s)	820
Sse9I	AATT	7 cut(s)	540, 810, 851, 908, 1162, 1400, 1432
SspI	AATATT	1 cut(s)	1147
SspMI	CTAG	3 cut(s)	80, 564, 821
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	318, 796, 941
StyI	CCWWGG	1 cut(s)	1388
SwaI	ATTTAAAT	1 cut(s)	907
TaiI	ACGT	8 cut(s)	30, 36, 213, 249, 360, 886, 1080, 1427
TaqI	TCGA	6 cut(s)	93, 308, 354, 582, 1018, 1032
TasI	AATT	7 cut(s)	540, 810, 851, 908, 1162, 1400, 1432
TatI	WGTACW	4 cut(s)	161, 480, 756, 1610
TauI	GCSGC	4 cut(s)	71, 458, 1489, 1636
TfiI	GAWTC	5 cut(s)	331, 388, 857, 1206, 1328
Tru1I	TTAA	7 cut(s)	669, 783, 894, 906, 1095, 1271, 1497
Tru9I	TTAA	7 cut(s)	669, 783, 894, 906, 1095, 1271, 1497
TscAI	CASTG	2 cut(s)	367, 1470
TseFI	GTSAC	5 cut(s)	362, 557, 700, 1425, 1461
TseI	GCWGC	9 cut(s)	49, 187, 232, 235, 285, 452, 638, 864, 1128
Tsp45I	GTSAC	5 cut(s)	362, 557, 700, 1425, 1461
TspDTI	ATGAA	6 cut(s)	1014, 1082, 1137, 1211, 1214, 1364
TspGWI	ACGGA	3 cut(s)	29, 171, 437
TspRI	CASTG	2 cut(s)	367, 1470
Tth111I	GACNNNGTC	1 cut(s)	1238
VpaK11BI	GGWCC	3 cut(s)	274, 316, 322
VspI	ATTAAT	1 cut(s)	1271
XagI	CCTNNNNNAGG	1 cut(s)	1122
XapI	RAATTY	3 cut(s)	851, 908, 1162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	2 cut(s)	1024, 1166
XspI	CTAG	3 cut(s)	80, 564, 821
ZraI	GACGTC	2 cut(s)	28, 358
ZrmI	AGTACT	2 cut(s)	163, 758
Zsp2I	ATGCAT	1 cut(s)	1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.