Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

68774483 .. 68778535

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGGCCACCCCTGCGTACCGAGACGACCTCCACACCATTCTCTCCGAGCAACGCCGAGAGCTCATGGCCGCCAAAACCCTAGACTCCGACCTCGACATCGCCTTCAGTCTCCAAATGCAGGAAGCCATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCGCCCTCCTCCGCCTCCGCCTCCGCCTCCGCCGCTCATCCACGACGAATACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGGTCCCTCTTCGAAATAAGGCAGGCGAAGGAAGACCTCGACCGTCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTTCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACTGTGGCGACGGCGCGTCTTCGTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGATTGTATTGCAAGGGTTTGGTTGGTGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCCTTGAAGGGCTCAATACAGCTCTCACTCTGGACTTGAAAAATGTTACATTTTTTTGTGATGGCTACATGCTTTACCAATACGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGATTGCAACATTAATCAATCAATTGGGAGTTCTACAGGGAAAATTTGAATATTGCAGCCCTTCTCTTGTGGCGCGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAGCAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGATCAACATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAGGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTAATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCGGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTGATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACAATGAAACACTGGCGCCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACTTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCCTGCCCAATCTGGGATGTGCGCAACATCTTACGCGAACAGCCACGACAAGTCCGGCCCATTATACGTGAACAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACGGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAACCCATTAGACATGAACAACCACAAAGGTTTCAAGTGCAGCAGCCCATTATGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAACCTGGACGTGAGCCACCTCAACAACTGCAGCCCAATATATATCAGCAGCACCGACGTGGACAGCCTGTTGTACATGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCAACAACAGAATTATGACTACAATGAACAGCCACGACAGGTACGGCGACAAGATGATTACAACTACTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

682

Amino Acids

78.49

Weight (kDa)

6.23

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	182 - 299	1.9e-18	Reverse transcriptase-like
IBR	PF01485	402 - 460	2.3e-10	IBR domain, a half RING-finger domain
IBR	PF01485	475 - 528	5.4e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	487 - 524	3.8e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1066, 1696
AasI	GACNNNNNNGTC	1 cut(s)	233
AatII	GACGTC	1 cut(s)	258
Acc16I	TGCGCA	1 cut(s)	1607
Acc36I	ACCTGC	2 cut(s)	1066, 1696
AccB1I	GGYRCC	2 cut(s)	1144, 1458
AccBSI	CCGCTC	2 cut(s)	196, 292
AccII	CGCG	6 cut(s)	163, 239, 269, 440, 856, 1620
AccIII	TCCGGA	1 cut(s)	379
AclI	AACGTT	1 cut(s)	375
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	3 cut(s)	263, 352, 824
AcuI	CTGAAG	2 cut(s)	88, 1451
AcyI	GRCGYC	2 cut(s)	255, 1459
AfaI	GTAC	8 cut(s)	17, 401, 425, 1134, 1809, 1917, 1971, 2016
AfiI	CCNNNNNNNGG	5 cut(s)	118, 428, 1097, 1597, 1838
AflIII	ACRYGT	1 cut(s)	1580
AgsI	TTSAA	9 cut(s)	674, 706, 830, 881, 949, 1002, 1490, 1727, 1778
AhdI	GACNNNNNGTC	1 cut(s)	439
AhlI	ACTAGT	1 cut(s)	1153
AjiI	CACGTC	3 cut(s)	1853, 1901, 1952
AjnI	CCWGG	6 cut(s)	769, 914, 1140, 1226, 1307, 1846
AleI	CACNNNNGTG	1 cut(s)	1899
AluBI	AGCT	6 cut(s)	61, 658, 689, 896, 1278, 1556
AluI	AGCT	6 cut(s)	61, 658, 689, 896, 1278, 1556
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	15, 113, 467, 947
AlwNI	CAGNNNCTG	1 cut(s)	1429
Ama87I	CYCGRG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	5 cut(s)	3, 66, 917, 1640, 1741
ApeKI	GCWGC	9 cut(s)	837, 1045, 1275, 1687, 1711, 1783, 1786, 1873, 1891
ApoI	RAATTY	3 cut(s)	263, 352, 824
ArsI	GACNNNNNNTTYG	6 cut(s)	466, 498, 854, 886, 1242, 1274
AseI	ATTAAT	2 cut(s)	794, 1241
Asp700I	GAANNNNTTC	1 cut(s)	997
AspLEI	GCGC	7 cut(s)	165, 241, 271, 440, 856, 1461, 1608
AspS9I	GGNCC	5 cut(s)	226, 294, 367, 1354, 1641
AsuHPI	GGTGA	2 cut(s)	524, 646
AsuII	TTCGAA	2 cut(s)	303, 533
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	4 cut(s)	226, 294, 367, 1354
BaeGI	GKGCMC	1 cut(s)	1091
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	1144, 1458
BanII	GRGCYC	2 cut(s)	63, 681
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	4 cut(s)	150, 330, 435, 1425
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	9 cut(s)	849, 1057, 1287, 1699, 1723, 1795, 1798, 1885, 1903
BccI	CCATC	3 cut(s)	617, 722, 1001
BceAI	ACGGC	7 cut(s)	218, 406, 418, 451, 1718, 1988, 2033
BciT130I	CCWGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
BcoDI	GTCTC	4 cut(s)	15, 113, 467, 947
BcuI	ACTAGT	1 cut(s)	1153
BfaI	CTAG	5 cut(s)	80, 576, 930, 1154, 2047
BfmI	CTRYAG	4 cut(s)	815, 897, 921, 1871
BfoI	RGCGCY	1 cut(s)	1462
BfuAI	ACCTGC	2 cut(s)	1066, 1696
Bme1390I	CCNGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
Bme18I	GGWCC	4 cut(s)	226, 294, 367, 1354
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	248
BmgBI	CACGTC	3 cut(s)	1853, 1901, 1952
BmgT120I	GGNCC	5 cut(s)	226, 294, 367, 1354, 1641
BmiI	GGNNCC	5 cut(s)	296, 1146, 1306, 1356, 1460
BmrFI	CCNGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
BmsI	GCATC	2 cut(s)	1304, 1408
BpiI	GAAGAC	4 cut(s)	150, 330, 435, 1425
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	2 cut(s)	632, 1323
Bpu14I	TTCGAA	2 cut(s)	303, 533
BpuEI	CTTGAG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	1652
BsaHI	GRCGYC	2 cut(s)	255, 1459
BsaJI	CCNNGG	4 cut(s)	770, 1226, 1358, 1700
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 428, 1097, 1597, 1838
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	1423, 1460, 1462
Bse3DI	GCAATG	1 cut(s)	649
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
BseDI	CCNNGG	4 cut(s)	770, 1226, 1358, 1700
BseGI	GGATG	3 cut(s)	198, 1399, 1606
BseLI	CCNNNNNNNGG	5 cut(s)	118, 428, 1097, 1597, 1838
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	2 cut(s)	468, 1101
BseNI	ACTGG	3 cut(s)	1423, 1460, 1462
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	1091
BseXI	GCAGC	9 cut(s)	849, 1057, 1287, 1699, 1723, 1795, 1798, 1885, 1903
BseYI	CCCAGC	2 cut(s)	548, 554
BsgI	GTGCAG	3 cut(s)	1001, 1730, 1802
Bsh1236I	CGCG	6 cut(s)	163, 239, 269, 440, 856, 1620
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	5 cut(s)	5, 68, 919, 1642, 1743
BshNI	GGYRCC	2 cut(s)	1144, 1458
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	380, 464, 1639
BslFI	GGGAC	2 cut(s)	280, 1340
BslI	CCNNNNNNNGG	5 cut(s)	118, 428, 1097, 1597, 1838
BsmAI	GTCTC	4 cut(s)	15, 113, 467, 947
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	280, 1340
BsmI	GAATGC	1 cut(s)	1363
BsnI	GGCC	5 cut(s)	5, 68, 919, 1642, 1743
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	2 cut(s)	303, 533
Bsp1286I	GDGCHC	3 cut(s)	63, 681, 1091
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	1915
Bsp143I	GATC	3 cut(s)	346, 1113, 1394
Bsp19I	CCATGG	1 cut(s)	1358
BspANI	GGCC	5 cut(s)	5, 68, 919, 1642, 1743
BspCNI	CTCAG	2 cut(s)	469, 1102
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	6 cut(s)	163, 239, 269, 440, 856, 1620
BspLI	GGNNCC	5 cut(s)	296, 1146, 1306, 1356, 1460
BspMAI	CTGCAG	2 cut(s)	925, 1875
BspMI	ACCTGC	2 cut(s)	1066, 1696
BspT104I	TTCGAA	2 cut(s)	303, 533
BspT107I	GGYRCC	2 cut(s)	1144, 1458
BsrBI	CCGCTC	2 cut(s)	196, 292
BsrDI	GCAATG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	1915
BsrI	ACTGG	3 cut(s)	1423, 1460, 1462
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	770, 1226, 1358, 1700
BssMI	GATC	3 cut(s)	346, 1113, 1394
BssNI	GRCGYC	2 cut(s)	255, 1459
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	1358
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
Bst4CI	ACNGT	4 cut(s)	335, 428, 1086, 1127
Bst6I	CTCTTC	2 cut(s)	305, 510
BstACI	GRCGYC	2 cut(s)	255, 1459
BstAUI	TGTACA	1 cut(s)	1915
BstBAI	YACGTR	1 cut(s)	1652
BstBI	TTCGAA	2 cut(s)	303, 533
BstC8I	GCNNGC	2 cut(s)	315, 921
BstDEI	CTNAG	2 cut(s)	477, 1110
BstDSI	CCRYGG	2 cut(s)	1358, 1700
BstENI	CCTNNNNNAGG	1 cut(s)	1095
BstF5I	GGATG	3 cut(s)	198, 1399, 1606
BstFNI	CGCG	6 cut(s)	163, 239, 269, 440, 856, 1620
BstH2I	RGCGCY	1 cut(s)	1462
BstHHI	GCGC	7 cut(s)	165, 241, 271, 440, 856, 1461, 1608
BstKTI	GATC	3 cut(s)	349, 1116, 1397
BstMAI	GTCTC	4 cut(s)	15, 113, 467, 947
BstMBI	GATC	3 cut(s)	346, 1113, 1394
BstMCI	CGRYCG	1 cut(s)	334
BstNI	CCWGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
BstNSI	RCATGY	5 cut(s)	739, 1052, 1380, 1584, 1817
BstSCI	CCNGG	6 cut(s)	769, 914, 1140, 1226, 1307, 1846
BstSFI	CTRYAG	4 cut(s)	815, 897, 921, 1871
BstSLI	GKGCMC	1 cut(s)	1091
BstUI	CGCG	6 cut(s)	163, 239, 269, 440, 856, 1620
BstV1I	GCAGC	9 cut(s)	849, 1057, 1287, 1699, 1723, 1795, 1798, 1885, 1903
BstV2I	GAAGAC	4 cut(s)	150, 330, 435, 1425
BsuRI	GGCC	5 cut(s)	5, 68, 919, 1642, 1743
BtgI	CCRYGG	2 cut(s)	1358, 1700
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	3 cut(s)	1853, 1901, 1952
BtsCI	GGATG	3 cut(s)	198, 1399, 1606
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	5 cut(s)	940, 978, 1091, 1453, 1469
BveI	ACCTGC	2 cut(s)	1066, 1696
Cac8I	GCNNGC	2 cut(s)	315, 921
CaiI	CAGNNNCTG	1 cut(s)	1429
CfoI	GCGC	7 cut(s)	165, 241, 271, 440, 856, 1461, 1608
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	5 cut(s)	226, 294, 367, 1354, 1641
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	8 cut(s)	16, 400, 424, 1133, 1808, 1916, 1970, 2015
CspCI	CAANNNNNGTGG	2 cut(s)	1499, 1534
CviQI	GTAC	8 cut(s)	16, 400, 424, 1133, 1808, 1916, 1970, 2015
DdeI	CTNAG	2 cut(s)	477, 1110
DinI	GGCGCC	1 cut(s)	1460
DpnI	GATC	3 cut(s)	348, 1115, 1396
DpnII	GATC	3 cut(s)	346, 1113, 1394
DrdI	GACNNNNNNGTC	1 cut(s)	233
DriI	GACNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	3, 66
Eam1104I	CTCTTC	2 cut(s)	305, 510
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	2 cut(s)	305, 510
EciI	GGCGGA	4 cut(s)	162, 168, 174, 180
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	1358
Eco24I	GRGCYC	2 cut(s)	63, 681
Eco47I	GGWCC	4 cut(s)	226, 294, 367, 1354
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	88, 1451
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1095
EcoO109I	RGGNCCY	1 cut(s)	1354
EcoRII	CCWGG	6 cut(s)	769, 914, 1140, 1226, 1307, 1846
EcoT14I	CCWWGG	1 cut(s)	1358
EcoT22I	ATGCAT	1 cut(s)	1319
EcoT38I	GRGCYC	2 cut(s)	63, 681
EgeI	GGCGCC	1 cut(s)	1460
EheI	GGCGCC	1 cut(s)	1460
ErhI	CCWWGG	1 cut(s)	1358
Esp3I	CGTCTC	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	1244, 1276
FaqI	GGGAC	2 cut(s)	280, 1340
FauI	CCCGC	1 cut(s)	1279
FokI	GGATG	3 cut(s)	185, 1386, 1613
FriOI	GRGCYC	2 cut(s)	63, 681
FspBI	CTAG	5 cut(s)	80, 576, 930, 1154, 2047
FspI	TGCGCA	1 cut(s)	1607
GlaI	GCGC	7 cut(s)	164, 240, 270, 439, 855, 1460, 1607
GsaI	CCCAGC	2 cut(s)	552, 558
GsuI	CTGGAG	2 cut(s)	632, 1323
HaeII	RGCGCY	1 cut(s)	1462
HaeIII	GGCC	5 cut(s)	5, 68, 919, 1642, 1743
HapII	CCGG	3 cut(s)	380, 464, 1639
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	7 cut(s)	165, 241, 271, 440, 856, 1461, 1608
Hin1I	GRCGYC	2 cut(s)	255, 1459
Hin6I	GCGC	7 cut(s)	163, 239, 269, 438, 854, 1459, 1606
HinP1I	GCGC	7 cut(s)	163, 239, 269, 438, 854, 1459, 1606
HinfI	GANTC	7 cut(s)	83, 340, 530, 607, 1176, 1184, 1328
HpaII	CCGG	3 cut(s)	380, 464, 1639
HphI	GGTGA	2 cut(s)	524, 646
Hpy166II	GTNNAC	3 cut(s)	1655, 1904, 1955
Hpy188I	TCNGA	8 cut(s)	46, 88, 339, 351, 588, 1111, 1369, 1721
Hpy188III	TCNNGA	7 cut(s)	259, 344, 380, 611, 698, 1094, 1302
Hpy8I	GTNNAC	3 cut(s)	1655, 1904, 1955
HpyAV	CCTTC	9 cut(s)	112, 313, 529, 668, 852, 943, 1091, 1493, 1558
HpyCH4III	ACNGT	4 cut(s)	335, 428, 1086, 1127
HpyCH4IV	ACGT	8 cut(s)	219, 255, 375, 750, 1651, 1852, 1900, 1951
HpyF3I	CTNAG	2 cut(s)	477, 1110
HpySE526I	ACGT	8 cut(s)	219, 255, 375, 750, 1651, 1852, 1900, 1951
Hsp92I	GRCGYC	2 cut(s)	255, 1459
HspAI	GCGC	7 cut(s)	163, 239, 269, 438, 854, 1459, 1606
KasI	GGCGCC	1 cut(s)	1458
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	346, 1113, 1394
LmnI	GCTCC	4 cut(s)	393, 655, 1304, 1553
Lsp1109I	GCAGC	9 cut(s)	849, 1057, 1287, 1699, 1723, 1795, 1798, 1885, 1903
LweI	GCATC	2 cut(s)	1304, 1408
MaeI	CTAG	5 cut(s)	80, 576, 930, 1154, 2047
MaeII	ACGT	8 cut(s)	219, 255, 375, 750, 1651, 1852, 1900, 1951
MaeIII	GTNAC	6 cut(s)	569, 712, 751, 860, 1198, 1505
MalI	GATC	3 cut(s)	348, 1115, 1396
MbiI	CCGCTC	2 cut(s)	196, 292
MboI	GATC	3 cut(s)	346, 1113, 1394
MboII	GAAGA	8 cut(s)	150, 292, 335, 435, 527, 616, 1179, 1430
MfeI	CAATTG	3 cut(s)	803, 1002, 1345
MhlI	GDGCHC	3 cut(s)	63, 681, 1091
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1459
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	111, 317
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1319
MroI	TCCGGA	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	794, 867, 1059, 1068, 1241, 1470
MslI	CAYNNNNRTG	1 cut(s)	1899
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	380, 464, 1639
MspR9I	CCNGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
MunI	CAATTG	3 cut(s)	803, 1002, 1345
Mva1269I	GAATGC	1 cut(s)	1363
MvaI	CCWGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
MvnI	CGCG	6 cut(s)	163, 239, 269, 440, 856, 1620
NarI	GGCGCC	1 cut(s)	1459
NcoI	CCATGG	1 cut(s)	1358
NdeII	GATC	3 cut(s)	346, 1113, 1394
NlaIV	GGNNCC	5 cut(s)	296, 1146, 1306, 1356, 1460
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	569, 860, 1198
NsbI	TGCGCA	1 cut(s)	1607
NsiI	ATGCAT	1 cut(s)	1319
NspI	RCATGY	5 cut(s)	739, 1052, 1380, 1584, 1817
NspV	TTCGAA	2 cut(s)	303, 533
OliI	CACNNNNGTG	1 cut(s)	1899
PaeR7I	CTCGAG	1 cut(s)	248
PaqCI	CACCTGC	2 cut(s)	1066, 1696
PciI	ACATGT	1 cut(s)	1580
PcsI	WCGNNNNNNNCGW	5 cut(s)	210, 213, 285, 452, 455
PctI	GAATGC	1 cut(s)	1363
PdmI	GAANNNNTTC	1 cut(s)	997
PfeI	GAWTC	6 cut(s)	340, 530, 607, 1176, 1184, 1328
PflFI	GACNNNGTC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	1462
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	1652
PpuMI	RGGWCCY	1 cut(s)	1354
PscI	ACATGT	1 cut(s)	1580
PshBI	ATTAAT	2 cut(s)	794, 1241
Psp124BI	GAGCTC	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	1354
Psp6I	CCWGG	6 cut(s)	769, 914, 1140, 1226, 1307, 1846
PspFI	CCCAGC	2 cut(s)	548, 554
PspGI	CCWGG	6 cut(s)	769, 914, 1140, 1226, 1307, 1846
PspN4I	GGNNCC	5 cut(s)	296, 1146, 1306, 1356, 1460
PspPI	GGNCC	5 cut(s)	226, 294, 367, 1354, 1641
PspPPI	RGGWCCY	1 cut(s)	1354
PspXI	VCTCGAGB	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	925, 1875
PstNI	CAGNNNCTG	1 cut(s)	1429
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	8 cut(s)	17, 401, 425, 1134, 1809, 1917, 1971, 2016
RsaNI	GTAC	8 cut(s)	16, 400, 424, 1133, 1808, 1916, 1970, 2015
RseI	CAYNNNNRTG	1 cut(s)	1899
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	6 cut(s)	794, 867, 1059, 1068, 1241, 1470
Sau3AI	GATC	3 cut(s)	346, 1113, 1394
Sau96I	GGNCC	5 cut(s)	226, 294, 367, 1354, 1641
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	6 cut(s)	771, 916, 1142, 1228, 1309, 1848
SduI	GDGCHC	3 cut(s)	63, 681, 1091
SfaNI	GCATC	2 cut(s)	1304, 1408
SfcI	CTRYAG	4 cut(s)	815, 897, 921, 1871
SfoI	GGCGCC	1 cut(s)	1460
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	2 cut(s)	303, 533
SinI	GGWCC	4 cut(s)	226, 294, 367, 1354
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	1899
SmlI	CTYRAG	2 cut(s)	248, 659
SmoI	CTYRAG	2 cut(s)	248, 659
SpeI	ACTAGT	1 cut(s)	1153
SspDI	GGCGCC	1 cut(s)	1458
SspI	AATATT	1 cut(s)	833
SspMI	CTAG	5 cut(s)	80, 576, 930, 1154, 2047
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	6 cut(s)	769, 914, 1140, 1226, 1307, 1846
StyI	CCWWGG	1 cut(s)	1358
TaaI	ACNGT	4 cut(s)	335, 428, 1086, 1127
TaiI	ACGT	8 cut(s)	222, 258, 378, 753, 1654, 1855, 1903, 1954
TaqI	TCGA	8 cut(s)	93, 249, 303, 330, 458, 533, 594, 991
TatI	WGTACW	2 cut(s)	1807, 1915
TauI	GCSGC	3 cut(s)	71, 196, 1687
TfiI	GAWTC	6 cut(s)	340, 530, 607, 1176, 1184, 1328
Tru1I	TTAA	6 cut(s)	794, 867, 1059, 1068, 1241, 1470
Tru9I	TTAA	6 cut(s)	794, 867, 1059, 1068, 1241, 1470
TscAI	CASTG	5 cut(s)	940, 985, 1091, 1460, 1469
TseFI	GTSAC	3 cut(s)	569, 860, 1198
TseI	GCWGC	9 cut(s)	837, 1045, 1275, 1687, 1711, 1783, 1786, 1873, 1891
Tsp45I	GTSAC	3 cut(s)	569, 860, 1198
TspDTI	ATGAA	7 cut(s)	1055, 1334, 1463, 1773, 1839, 1935, 2013
TspRI	CASTG	5 cut(s)	940, 985, 1091, 1460, 1469
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	4 cut(s)	226, 294, 367, 1354
VspI	ATTAAT	2 cut(s)	794, 1241
XagI	CCTNNNNNAGG	1 cut(s)	1095
XapI	RAATTY	3 cut(s)	263, 352, 824
XceI	RCATGY	5 cut(s)	739, 1052, 1380, 1584, 1817
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	997
XspI	CTAG	5 cut(s)	80, 576, 930, 1154, 2047
ZraI	GACGTC	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.