E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 120 | 1.8e-19 | Reverse transcriptase-like |
| IBR | PF01485 | 221 - 282 | 1.1e-08 | IBR domain, a half RING-finger domain |
| RVT_3 | PF13456 | 453 - 571 | 1.3e-17 | Reverse transcriptase-like |
| IBR | PF01485 | 673 - 732 | 1.4e-09 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 610, 1669, 1960 |
| AccBSI | CCGCTC | 1 cut(s) | 1271 |
| AciI | CCGC | 8 cut(s) | 5, 80, 116, 922, 1271, 1358, 1469, 1976 |
| AcoI | YGGCCR | 1 cut(s) | 1048 |
| AcsI | RAATTY | 6 cut(s) | 287, 344, 598, 1640, 1697, 2248 |
| AcuI | CTGAAG | 3 cut(s) | 780, 914, 2130 |
| AcvI | CACGTG | 1 cut(s) | 320 |
| AdeI | CACNNNGTG | 3 cut(s) | 323, 1296, 1676 |
| AfaI | GTAC | 2 cut(s) | 854, 2204 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 560, 1270 |
| AflII | CTTAAG | 1 cut(s) | 1028 |
| AflIII | ACRYGT | 1 cut(s) | 1864 |
| AhlI | ACTAGT | 2 cut(s) | 256, 619 |
| AjnI | CCWGG | 4 cut(s) | 232, 377, 1585, 2123 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 258, 290, 590, 622 |
| Alw21I | GWGCWC | 1 cut(s) | 818 |
| Alw26I | GTCTC | 4 cut(s) | 91, 410, 907, 1763 |
| Ama87I | CYCGRG | 2 cut(s) | 1263, 1390 |
| AoxI | GGCC | 4 cut(s) | 1024, 1040, 1048, 1413 |
| ApeKI | GCWGC | 9 cut(s) | 113, 300, 564, 984, 1004, 1466, 1653, 2120, 2193 |
| ApoI | RAATTY | 6 cut(s) | 287, 344, 598, 1640, 1697, 2248 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2058, 2090 |
| AseI | ATTAAT | 1 cut(s) | 707 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 460, 602, 1581 |
| AspLEI | GCGC | 1 cut(s) | 2277 |
| AsuHPI | GGTGA | 6 cut(s) | 73, 104, 335, 367, 1522, 1942 |
| AvaI | CYCGRG | 2 cut(s) | 1263, 1390 |
| BanI | GGYRCC | 3 cut(s) | 610, 1669, 1960 |
| BbrPI | CACGTG | 1 cut(s) | 320 |
| BbsI | GAAGAC | 1 cut(s) | 645 |
| Bbv12I | GWGCWC | 1 cut(s) | 818 |
| BbvI | GCAGC | 9 cut(s) | 100, 312, 551, 996, 1016, 1453, 1665, 2132, 2180 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BciT130I | CCWGG | 4 cut(s) | 234, 379, 1587, 2125 |
| BcoDI | GTCTC | 4 cut(s) | 91, 410, 907, 1763 |
| BcuI | ACTAGT | 2 cut(s) | 256, 619 |
| BfaI | CTAG | 6 cut(s) | 39, 257, 620, 1118, 1235, 1674 |
| BfmI | CTRYAG | 4 cut(s) | 298, 360, 1713, 2118 |
| BfrI | CTTAAG | 1 cut(s) | 1028 |
| Bme1390I | CCNGG | 4 cut(s) | 234, 379, 1587, 2125 |
| BmeT110I | CYCGRG | 2 cut(s) | 1263, 1390 |
| BmiI | GGNNCC | 6 cut(s) | 231, 612, 772, 1671, 1962, 2172 |
| BmrFI | CCNGG | 4 cut(s) | 234, 379, 1587, 2125 |
| BmsI | GCATC | 2 cut(s) | 1000, 1699 |
| BoxI | GACNNNNGTC | 1 cut(s) | 422 |
| BpiI | GAAGAC | 1 cut(s) | 645 |
| BpmI | CTGGAG | 1 cut(s) | 789 |
| BpuEI | CTTGAG | 2 cut(s) | 143, 1496 |
| Bsa29I | ATCGAT | 2 cut(s) | 468, 1821 |
| BsaAI | YACGTR | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 5 cut(s) | 824, 1200, 1264, 1586, 2174 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 560, 1270 |
| Bse118I | RCCGGY | 1 cut(s) | 1046 |
| Bse1I | ACTGG | 2 cut(s) | 906, 1518 |
| Bse3DI | GCAATG | 2 cut(s) | 403, 1465 |
| BseBI | CCWGG | 4 cut(s) | 234, 379, 1587, 2125 |
| BseCI | ATCGAT | 2 cut(s) | 468, 1821 |
| BseDI | CCNNGG | 5 cut(s) | 824, 1200, 1264, 1586, 2174 |
| BseGI | GGATG | 4 cut(s) | 543, 1189, 1896, 2215 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 560, 1270 |
| BseMI | GCAATG | 2 cut(s) | 403, 1465 |
| BseMII | CTCAG | 6 cut(s) | 92, 383, 831, 1209, 1736, 1917 |
| BseNI | ACTGG | 2 cut(s) | 906, 1518 |
| BseRI | GAGGAG | 1 cut(s) | 1281 |
| BseXI | GCAGC | 9 cut(s) | 100, 312, 551, 996, 1016, 1453, 1665, 2132, 2180 |
| BsgI | GTGCAG | 2 cut(s) | 464, 1817 |
| BshFI | GGCC | 4 cut(s) | 1026, 1042, 1050, 1415 |
| BshNI | GGYRCC | 3 cut(s) | 610, 1669, 1960 |
| BshVI | ATCGAT | 2 cut(s) | 468, 1821 |
| BsiHKAI | GWGCWC | 1 cut(s) | 818 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1263, 1390 |
| BsiSI | CCGG | 2 cut(s) | 1047, 1083 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 560, 1270 |
| BsmAI | GTCTC | 4 cut(s) | 91, 410, 907, 1763 |
| BsnI | GGCC | 4 cut(s) | 1026, 1042, 1050, 1415 |
| BsoBI | CYCGRG | 2 cut(s) | 1263, 1390 |
| Bsp1286I | GDGCHC | 1 cut(s) | 818 |
| Bsp143I | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| BspACI | CCGC | 8 cut(s) | 5, 80, 116, 922, 1271, 1358, 1469, 1976 |
| BspANI | GGCC | 4 cut(s) | 1026, 1042, 1050, 1415 |
| BspCNI | CTCAG | 6 cut(s) | 93, 382, 830, 1210, 1735, 1918 |
| BspDI | ATCGAT | 2 cut(s) | 468, 1821 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 6 cut(s) | 231, 612, 772, 1671, 1962, 2172 |
| BspMAI | CTGCAG | 2 cut(s) | 302, 2122 |
| BspQI | GCTCTTC | 1 cut(s) | 279 |
| BspT107I | GGYRCC | 3 cut(s) | 610, 1669, 1960 |
| BspTI | CTTAAG | 1 cut(s) | 1028 |
| BsrBI | CCGCTC | 1 cut(s) | 1271 |
| BsrDI | GCAATG | 2 cut(s) | 403, 1465 |
| BsrFI | RCCGGY | 1 cut(s) | 1046 |
| BsrI | ACTGG | 2 cut(s) | 906, 1518 |
| BssAI | RCCGGY | 1 cut(s) | 1046 |
| BssECI | CCNNGG | 5 cut(s) | 824, 1200, 1264, 1586, 2174 |
| BssMI | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| BssT1I | CCWWGG | 3 cut(s) | 824, 1200, 2174 |
| Bst2UI | CCWGG | 4 cut(s) | 234, 379, 1587, 2125 |
| Bst4CI | ACNGT | 3 cut(s) | 1902, 2271, 2282 |
| Bst6I | CTCTTC | 2 cut(s) | 279, 2193 |
| BstAFI | CTTAAG | 1 cut(s) | 1028 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 789, 1010, 1709 |
| BstBAI | YACGTR | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 3 cut(s) | 384, 1052, 1807 |
| BstDEI | CTNAG | 8 cut(s) | 101, 369, 727, 817, 1218, 1722, 1883, 1926 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 558 |
| BstF5I | GGATG | 4 cut(s) | 543, 1189, 1896, 2215 |
| BstHHI | GCGC | 1 cut(s) | 2277 |
| BstKTI | GATC | 4 cut(s) | 375, 1728, 2239, 2356 |
| BstMAI | GTCTC | 4 cut(s) | 91, 410, 907, 1763 |
| BstMBI | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 356, 789, 1010, 1039, 1709 |
| BstNI | CCWGG | 4 cut(s) | 234, 379, 1587, 2125 |
| BstNSI | RCATGY | 3 cut(s) | 515, 1813, 1868 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 422 |
| BstSCI | CCNGG | 4 cut(s) | 232, 377, 1585, 2123 |
| BstSFI | CTRYAG | 4 cut(s) | 298, 360, 1713, 2118 |
| BstV1I | GCAGC | 9 cut(s) | 100, 312, 551, 996, 1016, 1453, 1665, 2132, 2180 |
| BstV2I | GAAGAC | 1 cut(s) | 645 |
| Bsu15I | ATCGAT | 2 cut(s) | 468, 1821 |
| BsuRI | GGCC | 4 cut(s) | 1026, 1042, 1050, 1415 |
| BsuTUI | ATCGAT | 2 cut(s) | 468, 1821 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| BtsCI | GGATG | 4 cut(s) | 543, 1189, 1896, 2215 |
| BtsI | GCAGTG | 2 cut(s) | 932, 2344 |
| BtsIMutI | CAGTG | 6 cut(s) | 899, 932, 1511, 1907, 2276, 2344 |
| Cac8I | GCNNGC | 3 cut(s) | 384, 1052, 1807 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 2277 |
| Cfr10I | RCCGGY | 1 cut(s) | 1046 |
| ClaI | ATCGAT | 2 cut(s) | 468, 1821 |
| Csp6I | GTAC | 2 cut(s) | 853, 2203 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 207, 242, 962, 997, 2315, 2350 |
| CviQI | GTAC | 2 cut(s) | 853, 2203 |
| DdeI | CTNAG | 8 cut(s) | 101, 369, 727, 817, 1218, 1722, 1883, 1926 |
| DpnI | GATC | 4 cut(s) | 374, 1727, 2238, 2355 |
| DpnII | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| DraI | TTTAAA | 2 cut(s) | 343, 1696 |
| DraIII | CACNNNGTG | 3 cut(s) | 323, 1296, 1676 |
| EaeI | YGGCCR | 1 cut(s) | 1048 |
| Eam1104I | CTCTTC | 2 cut(s) | 279, 2193 |
| EarI | CTCTTC | 2 cut(s) | 279, 2193 |
| Eco130I | CCWWGG | 3 cut(s) | 824, 1200, 2174 |
| Eco57I | CTGAAG | 3 cut(s) | 780, 914, 2130 |
| Eco72I | CACGTG | 1 cut(s) | 320 |
| Eco88I | CYCGRG | 2 cut(s) | 1263, 1390 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 558 |
| EcoRI | GAATTC | 1 cut(s) | 2248 |
| EcoRII | CCWGG | 4 cut(s) | 232, 377, 1585, 2123 |
| EcoT14I | CCWWGG | 3 cut(s) | 824, 1200, 2174 |
| EcoT22I | ATGCAT | 2 cut(s) | 785, 2135 |
| ErhI | CCWWGG | 3 cut(s) | 824, 1200, 2174 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 258, 290, 710, 742, 1611, 1643 |
| FauI | CCCGC | 1 cut(s) | 1264 |
| FauNDI | CATATG | 1 cut(s) | 428 |
| FokI | GGATG | 4 cut(s) | 550, 1176, 1903, 2202 |
| FspBI | CTAG | 6 cut(s) | 39, 257, 620, 1118, 1235, 1674 |
| GlaI | GCGC | 1 cut(s) | 2276 |
| GsuI | CTGGAG | 1 cut(s) | 789 |
| HaeIII | GGCC | 4 cut(s) | 1026, 1042, 1050, 1415 |
| HapII | CCGG | 2 cut(s) | 1047, 1083 |
| HhaI | GCGC | 1 cut(s) | 2277 |
| Hin6I | GCGC | 1 cut(s) | 2275 |
| HinP1I | GCGC | 1 cut(s) | 2275 |
| HincII | GTYRAC | 2 cut(s) | 262, 1153 |
| HindII | GTYRAC | 2 cut(s) | 262, 1153 |
| HindIII | AAGCTT | 2 cut(s) | 200, 1553 |
| HpaII | CCGG | 2 cut(s) | 1047, 1083 |
| HphI | GGTGA | 6 cut(s) | 73, 104, 335, 367, 1522, 1942 |
| Hpy166II | GTNNAC | 3 cut(s) | 262, 1153, 1907 |
| Hpy188I | TCNGA | 8 cut(s) | 372, 574, 1019, 1219, 1404, 1449, 1725, 1927 |
| Hpy188III | TCNNGA | 5 cut(s) | 557, 768, 1263, 1342, 1427 |
| Hpy8I | GTNNAC | 3 cut(s) | 262, 1153, 1907 |
| Hpy99I | CGWCG | 1 cut(s) | 1038 |
| HpyCH4III | ACNGT | 3 cut(s) | 1902, 2271, 2282 |
| HpyCH4IV | ACGT | 3 cut(s) | 319, 860, 2100 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 356, 789, 1010, 1039, 1709 |
| HpyF3I | CTNAG | 8 cut(s) | 101, 369, 727, 817, 1218, 1722, 1883, 1926 |
| HpySE526I | ACGT | 3 cut(s) | 319, 860, 2100 |
| HspAI | GCGC | 1 cut(s) | 2275 |
| Kzo9I | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| LguI | GCTCTTC | 1 cut(s) | 279 |
| LmnI | GCTCC | 5 cut(s) | 118, 770, 1075, 1268, 1471 |
| Lsp1109I | GCAGC | 9 cut(s) | 100, 312, 551, 996, 1016, 1453, 1665, 2132, 2180 |
| LweI | GCATC | 2 cut(s) | 1000, 1699 |
| MaeI | CTAG | 6 cut(s) | 39, 257, 620, 1118, 1235, 1674 |
| MaeII | ACGT | 3 cut(s) | 319, 860, 2100 |
| MalI | GATC | 4 cut(s) | 374, 1727, 2238, 2355 |
| MbiI | CCGCTC | 1 cut(s) | 1271 |
| MboI | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| MhlI | GDGCHC | 1 cut(s) | 818 |
| MlyI | GAGTC | 5 cut(s) | 659, 684, 909, 1165, 2034 |
| MmeI | TCCRAC | 1 cut(s) | 997 |
| Mph1103I | ATGCAT | 2 cut(s) | 785, 2135 |
| MroXI | GAANNNNTTC | 3 cut(s) | 460, 602, 1581 |
| MspA1I | CMGCKG | 1 cut(s) | 1731 |
| MspCI | CTTAAG | 1 cut(s) | 1028 |
| MspI | CCGG | 2 cut(s) | 1047, 1083 |
| MspR9I | CCNGG | 4 cut(s) | 234, 379, 1587, 2125 |
| MvaI | CCWGG | 4 cut(s) | 234, 379, 1587, 2125 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 356, 789, 1010, 1039, 1709 |
| NdeI | CATATG | 1 cut(s) | 428 |
| NdeII | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| NlaIV | GGNNCC | 6 cut(s) | 231, 612, 772, 1671, 1962, 2172 |
| NmuCI | GTSAC | 5 cut(s) | 32, 175, 861, 897, 1385 |
| NsiI | ATGCAT | 2 cut(s) | 785, 2135 |
| NspI | RCATGY | 3 cut(s) | 515, 1813, 1868 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PciI | ACATGT | 1 cut(s) | 1864 |
| PciSI | GCTCTTC | 1 cut(s) | 279 |
| PdmI | GAANNNNTTC | 3 cut(s) | 460, 602, 1581 |
| PfeI | GAWTC | 9 cut(s) | 293, 642, 764, 1423, 1582, 1646, 2000, 2114, 2210 |
| PflFI | GACNNNGTC | 1 cut(s) | 674 |
| PfoI | TCCNGGA | 1 cut(s) | 232 |
| PleI | GAGTC | 5 cut(s) | 658, 683, 909, 1165, 2033 |
| PmaCI | CACGTG | 1 cut(s) | 320 |
| PmlI | CACGTG | 1 cut(s) | 320 |
| PpsI | GAGTC | 5 cut(s) | 658, 683, 909, 1165, 2033 |
| Ppu21I | YACGTR | 1 cut(s) | 320 |
| PscI | ACATGT | 1 cut(s) | 1864 |
| PshAI | GACNNNNGTC | 1 cut(s) | 422 |
| PshBI | ATTAAT | 1 cut(s) | 707 |
| Psp6I | CCWGG | 4 cut(s) | 232, 377, 1585, 2123 |
| PspCI | CACGTG | 1 cut(s) | 320 |
| PspGI | CCWGG | 4 cut(s) | 232, 377, 1585, 2123 |
| PspN4I | GGNNCC | 6 cut(s) | 231, 612, 772, 1671, 1962, 2172 |
| PstI | CTGCAG | 2 cut(s) | 302, 2122 |
| PsyI | GACNNNGTC | 1 cut(s) | 674 |
| PvuII | CAGCTG | 1 cut(s) | 1731 |
| RsaI | GTAC | 2 cut(s) | 854, 2204 |
| RsaNI | GTAC | 2 cut(s) | 853, 2203 |
| SapI | GCTCTTC | 1 cut(s) | 279 |
| Sau3AI | GATC | 4 cut(s) | 372, 1725, 2236, 2353 |
| SchI | GAGTC | 5 cut(s) | 659, 684, 909, 1165, 2034 |
| ScrFI | CCNGG | 4 cut(s) | 234, 379, 1587, 2125 |
| SduI | GDGCHC | 1 cut(s) | 818 |
| SfaNI | GCATC | 2 cut(s) | 1000, 1699 |
| SfcI | CTRYAG | 4 cut(s) | 298, 360, 1713, 2118 |
| SmiI | ATTTAAAT | 1 cut(s) | 343 |
| SmlI | CTYRAG | 3 cut(s) | 122, 1028, 1475 |
| SmoI | CTYRAG | 3 cut(s) | 122, 1028, 1475 |
| SpeI | ACTAGT | 2 cut(s) | 256, 619 |
| SsiI | CCGC | 8 cut(s) | 5, 80, 116, 922, 1271, 1358, 1469, 1976 |
| SspI | AATATT | 4 cut(s) | 212, 583, 1258, 1936 |
| SspMI | CTAG | 6 cut(s) | 39, 257, 620, 1118, 1235, 1674 |
| StyD4I | CCNGG | 4 cut(s) | 232, 377, 1585, 2123 |
| StyI | CCWWGG | 3 cut(s) | 824, 1200, 2174 |
| SwaI | ATTTAAAT | 1 cut(s) | 343 |
| TaaI | ACNGT | 3 cut(s) | 1902, 2271, 2282 |
| TaiI | ACGT | 3 cut(s) | 322, 863, 2103 |
| TaqI | TCGA | 6 cut(s) | 57, 454, 468, 1169, 1410, 1821 |
| TatI | WGTACW | 1 cut(s) | 2202 |
| TauI | GCSGC | 1 cut(s) | 925 |
| TfiI | GAWTC | 9 cut(s) | 293, 642, 764, 1423, 1582, 1646, 2000, 2114, 2210 |
| TscAI | CASTG | 6 cut(s) | 906, 932, 1518, 1907, 2276, 2344 |
| TseFI | GTSAC | 5 cut(s) | 32, 175, 861, 897, 1385 |
| TseI | GCWGC | 9 cut(s) | 113, 300, 564, 984, 1004, 1466, 1653, 2120, 2193 |
| Tsp45I | GTSAC | 5 cut(s) | 32, 175, 861, 897, 1385 |
| TspGWI | ACGGA | 3 cut(s) | 1051, 1068, 2084 |
| TspRI | CASTG | 6 cut(s) | 906, 932, 1518, 1907, 2276, 2344 |
| Tth111I | GACNNNGTC | 1 cut(s) | 674 |
| Vha464I | CTTAAG | 1 cut(s) | 1028 |
| VspI | ATTAAT | 1 cut(s) | 707 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 558 |
| XapI | RAATTY | 6 cut(s) | 287, 344, 598, 1640, 1697, 2248 |
| XceI | RCATGY | 3 cut(s) | 515, 1813, 1868 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1423 |
| XmnI | GAANNNNTTC | 3 cut(s) | 460, 602, 1581 |
| XspI | CTAG | 6 cut(s) | 39, 257, 620, 1118, 1235, 1674 |
| Zsp2I | ATGCAT | 2 cut(s) | 785, 2135 |